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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlorobiota
Anticodon = CGT
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.523734 (2 seq.)
>W1710856752
LLZP01000016
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
83415
83488
+
Thr
CGT
[ENA]
¡û
>W1610719133
LLZP01000016
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
83415
83488
+
Thr
CGT
[ENA]
¡û
Identical group No.526991 (3 seq.)
>W1711626072
MPJE01000017
Chlorobiota
Chlorobium sp. KB01 [MPJE]
37174
37101
-
Thr
CGT
[ENA]
¡û
>w018047
AASE01000016
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
35413
35490
+
Thr
CGT
[ENA]
¡û
>W2010532698
JAAORA010000001
Chlorobiota
Chlorobium sp. BLA1 [JAAORA]
670369
670442
+
Thr
CGT
[ENA]
¡û
Identical group No.538414 (9 seq.)
>C171049480
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
47090
47017
-
Thr
CGT
-
¡û
>w007174
AAIJ01000019
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
23754
23682
-
Thr
CGT
[ENA]
¡û
>C08007188
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
54774
54699
-
Thr
CGT
[Ensembl]
¡û
>W1810062175
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
2347288
2347361
+
Thr
CGT
[ENA]
¡û
>W1810062222
PDNY01000009
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
10951
11026
+
Thr
CGT
[ENA]
¡û
>W2010640176
JABVZQ010000003
Chlorobiota
Prosthecochloris sp. DSM 1685 [JABVZQ]
145941
145866
-
Thr
CGT
[ENA]
¡û
>W2011980190
VDCI01000001
Chlorobiota
Prosthecochloris vibrioformis DSM 260 [VDCI]
5848
5921
+
Thr
CGT
[ENA]
¡û
>W2110315941
JADGIH010000003
Chlorobiota
Prosthecochloris ethylica N2 [JADGIH]
76550
76625
+
Thr
CGT
[ENA]
¡û
>W2110315993
JADGII010000006
Chlorobiota
Prosthecochloris ethylica N3 [JADGII]
146575
146500
-
Thr
CGT
[ENA]
¡û
Identical group No.538434 (2 seq.)
>w006112
AAHJ01000011
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
11536
11611
+
Thr
CGT
[ENA]
¡û
>C08003529
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
33699
33626
-
Thr
CGT
[Ensembl]
¡û
Identical group No.542105 (8 seq.)
>C018281
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
30799
30724
-
Thr
CGT
[Ensembl]
¡û
>WENV183812126
PYLN01000163
[PYLN] freshwater metagenome; meromictic lake
2937
3014
+
Thr
CGT
[ENA]
¡û
>W09103344
AAJD01000003
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
2305
2382
+
Thr
CGT
[ENA]
¡û
>W2011502933
RXYJ01000002
Chlorobiota
Chlorobium phaeovibrioides GrKhr17 [RXYJ]
267272
267195
-
Thr
CGT
[ENA]
¡û
>W2011502978
RXYK01000006
Chlorobiota
Chlorobium phaeovibrioides BrKhr17 [RXYK]
60091
60014
-
Thr
CGT
[ENA]
¡û
>W2012093246
VMRG01000001
Chlorobiota
Chlorobium phaeovibrioides GrTcv12 [VMRG]
30799
30722
-
Thr
CGT
[ENA]
¡û
>W2012440398
WUBZ01000013
Chlorobiota
Chlorobium phaeovibrioides ZM [WUBZ]
2812
2889
+
Thr
CGT
[ENA]
¡û
>C201100841
CP041698
Chlorobiota
Chlorobium phaeovibrioides PhvTcv-s14 [CP041698]
40431
40508
+
Thr
CGT
-
¡û
Identical group No.544698 (8 seq.)
>WENV181232332
OFEN01000061
[OFEN] coral metagenome; NA
27774
27701
-
Thr
CGT
[ENA]
¡û
>WENV181232347
OFEN01000099
[OFEN] coral metagenome; NA
3691
3764
+
Thr
CGT
[ENA]
¡û
>WENV181233235
OFES01000017
[OFES] coral metagenome; NA
12649
12576
-
Thr
CGT
[ENA]
¡û
>WENV181233238
OFES01000022
[OFES] coral metagenome; NA
3984
4057
+
Thr
CGT
[ENA]
¡û
>WENV181303872
OFHR01000064
[OFHR] coral metagenome; NA
12679
12606
-
Thr
CGT
[ENA]
¡û
>W1810062291
PDNZ01000008
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
107890
107817
-
Thr
CGT
[ENA]
¡û
>C231534744
CP110622
Chlorobiota
Prosthecochloris sp. SCSIO W1103 [CP110622]
40553
40480
-
Thr
CGT
-
¡û
>C231534790
CP110623
Chlorobiota
Prosthecochloris sp. SCSIO W1101 [CP110623]
40380
40307
-
Thr
CGT
-
¡û
Identical group No.547991 (16 seq.)
>W1711136090
LUZT01000013
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
12233
12160
-
Thr
CGT
[ENA]
¡û
>W1711167297
LVWG01000016
Chlorobiota
Pelodictyon luteolum [LVWG]
58043
57970
-
Thr
CGT
[ENA]
¡û
>C171060569
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
2480370
2480443
+
Thr
CGT
-
¡û
>C005306
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
2554003
2554075
+
Thr
CGT
[Ensembl]
¡û
>C007028
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
2097742
2097814
+
Thr
CGT
[Ensembl]
¡û
>C016776
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
27078
27006
-
Thr
CGT
[Ensembl]
¡û
>w007196
AAIK01000013
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
52307
52384
+
Thr
CGT
[ENA]
¡û
>C08003621
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
51170
51097
-
Thr
CGT
[Ensembl]
¡û
>C08007728
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
46868
46795
-
Thr
CGT
[Ensembl]
¡û
>WENV170613746
FUWD012818048
[FUWD] metagenome; unknown
3973
3900
-
Thr
CGT
[ENA]
¡û
>W2011543734
SDGU01000004
Chlorobiota
Chlorobaculum sp. 24CR [SDGU]
16916
16989
+
Thr
CGT
[ENA]
¡û
>W2011609974
SJPA01000002
Chlorobiota
Chlorobium sp. N1 [SJPA]
314953
314880
-
Thr
CGT
[ENA]
¡û
>W2011980147
VDCH01000002
Chlorobiota
Chlorobaculum thiosulfatiphilum DSM 249 [VDCH]
159097
159170
+
Thr
CGT
[ENA]
¡û
>C231486391
CP104202
Chlorobiota
Chlorobaculum sp. MV4-Y [CP104202]
2091407
2091480
+
Thr
CGT
-
¡û
>W1610947210
LUZT01000013
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
12233
12160
-
Thr
CGT
[ENA]
¡û
>W1610977628
LVWG01000016
Chlorobiota
Pelodictyon luteolum [LVWG]
58043
57970
-
Thr
CGT
[ENA]
¡û
Identical group No.548213 (1 seq.)
>C08003831
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
564778
564703
-
Thr
CGT
[Ensembl]
¡û
Identical group No.592843 (7 seq.)
>W1710858981
LMBR01000025
Chlorobiota
Chlorobium limicola [LMBR]
4879
4952
+
Thr
CGT
[ENA]
¡û
>C006619
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
51965
51893
-
Thr
CGT
[Ensembl]
¡û
>WENV170624520
FUWD013182597
[FUWD] metagenome; unknown
11300
11227
-
Thr
CGT
[ENA]
¡û
>WENV170632806
FUWD013387330
[FUWD] metagenome; unknown
11300
11227
-
Thr
CGT
[ENA]
¡û
>C181068805
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
52637
52564
-
Thr
CGT
-
¡û
>W09102662
AAIB01000015
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
36261
36334
+
Thr
CGT
[ENA]
¡û
>W1610721327
LMBR01000025
Chlorobiota
Chlorobium limicola [LMBR]
4879
4952
+
Thr
CGT
[ENA]
¡û
Identical group No.595768 (1 seq.)
>W141803612
JPGV01000009
Chlorobiota
[Candidatus Thermochlorobacteriaceae] bacterium GBChlB GBChlB [JPGV]
73544
73617
+
Thr
CGT
[ENA]
¡û
Identical group No.608914 (2 seq.)
>W1610552301
JYPE01000005
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
252814
252889
+
Thr
CGT
[ENA]
¡û
>W1710662966
JYPE01000005
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
252814
252889
+
Thr
CGT
[ENA]
¡û
Identical group No.610186 (3 seq.)
>w006978
AAIC01000142
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
2192
2115
-
Thr
CGT
[ENA]
¡û
>WENV170635766
JDSH01001296
[JDSH] bioreactor metagenome; continuous culture bioreactor electron acceptor NO2- transfer2; day 38 after inoculation
1579
1652
+
Thr
CGT
[ENA]
¡û
>SRA1035433
SRR035089.303046
454 Sequencing (SRP001810)
525
452
-
Thr
CGT
[SRA]
Identical group No.615735 (2 seq.)
>w006965
AAIC01000033
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
15354
15282
-
Thr
CGT
[ENA]
¡û
>C08003667
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
37001
36926
-
Thr
CGT
[Ensembl]
¡û
Identical group No.615742 (1 seq.)
>w000754
AAIC01000399
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
1344
1269
-
Thr
CGT
[ENA]
¡û
Identical group No.620109 (2 seq.)
>C171114028
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
47789
47714
-
Thr
CGT
-
¡û
>WENV183513007
OMKS01002287
[OMKS] sediment metagenome; hot spring sediment
12116
12043
-
Thr
CGT
[ENA]
¡û
Identical group No.661514 (2 seq.)
>W1710856712
LLZO01000033
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
3880
3953
+
Thr
CGT
[ENA]
¡û
>W1610719093
LLZO01000033
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
3880
3953
+
Thr
CGT
[ENA]
¡û
Identical group No.664446 (2 seq.)
>W1710887509
LMYZ01000217
Chlorobiota
Chlorobi bacterium OLB7 [LMYZ]
2777
2704
-
Thr
CGT
[ENA]
¡û
>W1610748209
LMYZ01000217
Chlorobiota
Chlorobi bacterium OLB7 [LMYZ]
2777
2704
-
Thr
CGT
[ENA]
¡û
Identical group No.666933 (2 seq.)
>W1610594307
LDXS01000001
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
764006
763933
-
Thr
CGT
[ENA]
¡û
>W1710713759
LDXS01000001
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
764006
763933
-
Thr
CGT
[ENA]
¡û
Identical group No.668278 (1 seq.)
>C211198505
CP065014
Chlorobiota
Chlorobi bacterium [CP065014]
1059424
1059497
+
Thr
CGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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