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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlorobiota
Anticodon = CTC
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323858 (28 seq.)
>W1711136080
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
515312
515236
-
Glu
CTC
[ENA]
¡û
>W1711167327
LVWG01000033
Chlorobiota
Pelodictyon luteolum [LVWG]
1550
1476
-
Glu
CTC
[ENA]
¡û
>W1711626096
MPJE01000082
Chlorobiota
Chlorobium sp. KB01 [MPJE]
4582
4506
-
Glu
CTC
[ENA]
¡û
>C171060565
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
1832883
1832959
+
Glu
CTC
-
¡û
>C005302
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
1749027
1749100
+
Glu
CTC
[Ensembl]
¡û
>C006614
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
919651
919575
-
Glu
CTC
[Ensembl]
¡û
>C007041
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
563486
563410
-
Glu
CTC
[Ensembl]
¡û
>C016768
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
656739
656666
-
Glu
CTC
[Ensembl]
¡û
>w018038
AASE01000010
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
20598
20676
+
Glu
CTC
[ENA]
¡û
>w007204
AAIK01000018
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
18768
18690
-
Glu
CTC
[ENA]
¡û
>w006121
AAHJ01000037
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
23666
23588
-
Glu
CTC
[ENA]
¡û
>C08003523
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
588042
587968
-
Glu
CTC
[Ensembl]
¡û
>C08003617
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
624162
624089
-
Glu
CTC
[Ensembl]
¡û
>C08007725
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
892075
892002
-
Glu
CTC
[Ensembl]
¡û
>WENV170598548
FUWD010039543
[FUWD] metagenome; unknown
299
375
+
Glu
CTC
[ENA]
¡û
>WENV170614309
FUWD012829894
[FUWD] metagenome; unknown
1366
1292
-
Glu
CTC
[ENA]
¡û
>WENV170624367
FUWD013180667
[FUWD] metagenome; unknown
2341
2267
-
Glu
CTC
[ENA]
¡û
>WENV170624371
FUWD013180668
[FUWD] metagenome; unknown
274
200
-
Glu
CTC
[ENA]
¡û
>WENV170632654
FUWD013385782
[FUWD] metagenome; unknown
2341
2267
-
Glu
CTC
[ENA]
¡û
>WENV170632658
FUWD013385783
[FUWD] metagenome; unknown
274
200
-
Glu
CTC
[ENA]
¡û
>W09102669
AAIB01000033
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
8688
8764
+
Glu
CTC
[ENA]
¡û
>W2010532726
JAAORA010000004
Chlorobiota
Chlorobium sp. BLA1 [JAAORA]
181654
181729
+
Glu
CTC
[ENA]
¡û
>W2011543765
SDGU01000045
Chlorobiota
Chlorobaculum sp. 24CR [SDGU]
14642
14566
-
Glu
CTC
[ENA]
¡û
>W2011610002
SJPA01000009
Chlorobiota
Chlorobium sp. N1 [SJPA]
64637
64711
+
Glu
CTC
[ENA]
¡û
>W2011980165
VDCH01000011
Chlorobiota
Chlorobaculum thiosulfatiphilum DSM 249 [VDCH]
30157
30083
-
Glu
CTC
[ENA]
¡û
>C231486384
CP104202
Chlorobiota
Chlorobaculum sp. MV4-Y [CP104202]
1528148
1528224
+
Glu
CTC
-
¡û
>W1610947200
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
515312
515236
-
Glu
CTC
[ENA]
¡û
>W1610977658
LVWG01000033
Chlorobiota
Pelodictyon luteolum [LVWG]
1550
1476
-
Glu
CTC
[ENA]
¡û
Identical group No.337335 (7 seq.)
>C018250
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1365370
1365443
+
Glu
CTC
[Ensembl]
¡û
>WENV183812116
PYLN01000076
[PYLN] freshwater metagenome; meromictic lake
8971
9045
+
Glu
CTC
[ENA]
¡û
>W09103369
AAJD01000013
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
21659
21733
+
Glu
CTC
[ENA]
¡û
>W2011502930
RXYJ01000001
Chlorobiota
Chlorobium phaeovibrioides GrKhr17 [RXYJ]
1504
1430
-
Glu
CTC
[ENA]
¡û
>W2011502982
RXYK01000009
Chlorobiota
Chlorobium phaeovibrioides BrKhr17 [RXYK]
2285
2211
-
Glu
CTC
[ENA]
¡û
>W2012093220
VMRG01000001
Chlorobiota
Chlorobium phaeovibrioides GrTcv12 [VMRG]
1496611
1496685
+
Glu
CTC
[ENA]
¡û
>C201100885
CP041698
Chlorobiota
Chlorobium phaeovibrioides PhvTcv-s14 [CP041698]
663229
663155
-
Glu
CTC
-
¡û
Identical group No.339741 (16 seq.)
>C171049454
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
1647085
1647159
+
Glu
CTC
-
¡û
>C171114007
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
1711906
1711982
+
Glu
CTC
-
¡û
>w006945
AAIC01000002
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
113087
113165
+
Glu
CTC
[ENA]
¡û
>C08003646
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
1965746
1965820
+
Glu
CTC
[Ensembl]
¡û
>C08007182
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
743557
743483
-
Glu
CTC
[Ensembl]
¡û
>WENV183516002
OMKS01117229
[OMKS] sediment metagenome; hot spring sediment
456
532
+
Glu
CTC
[ENA]
¡û
>C181068782
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
1737268
1737342
+
Glu
CTC
-
¡û
>W1810062170
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
1774503
1774577
+
Glu
CTC
[ENA]
¡û
>W1810062245
PDNY01000032
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
21090
21164
+
Glu
CTC
[ENA]
¡û
>W1810062288
PDNZ01000007
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
161869
161945
+
Glu
CTC
[ENA]
¡û
>W2010640191
JABVZQ010000008
Chlorobiota
Prosthecochloris sp. DSM 1685 [JABVZQ]
85693
85767
+
Glu
CTC
[ENA]
¡û
>W2011980222
VDCI01000007
Chlorobiota
Prosthecochloris vibrioformis DSM 260 [VDCI]
96017
96091
+
Glu
CTC
[ENA]
¡û
>W2110315962
JADGIH010000008
Chlorobiota
Prosthecochloris ethylica N2 [JADGIH]
5228
5154
-
Glu
CTC
[ENA]
¡û
>W2110315995
JADGII010000007
Chlorobiota
Prosthecochloris ethylica N3 [JADGII]
5338
5264
-
Glu
CTC
[ENA]
¡û
>C231534740
CP110622
Chlorobiota
Prosthecochloris sp. SCSIO W1103 [CP110622]
708876
708800
-
Glu
CTC
-
¡û
>C231534786
CP110623
Chlorobiota
Prosthecochloris sp. SCSIO W1101 [CP110623]
729389
729313
-
Glu
CTC
-
¡û
Identical group No.343104 (1 seq.)
>C08003811
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
2925198
2925274
+
Glu
CTC
[Ensembl]
¡û
Identical group No.384922 (1 seq.)
>W141803609
JPGV01000007
Chlorobiota
[Candidatus Thermochlorobacteriaceae] bacterium GBChlB GBChlB [JPGV]
3899
3823
-
Glu
CTC
[ENA]
¡û
Identical group No.444272 (2 seq.)
>W1710856733
LLZO01000198
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
4494
4570
+
Glu
CTC
[ENA]
¡û
>W1610719114
LLZO01000198
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
4494
4570
+
Glu
CTC
[ENA]
¡û
Identical group No.664445 (2 seq.)
>W1710887507
LMYZ01000190
Chlorobiota
Chlorobi bacterium OLB7 [LMYZ]
5287
5212
-
Glu
CTC
[ENA]
¡û
>W1610748207
LMYZ01000190
Chlorobiota
Chlorobi bacterium OLB7 [LMYZ]
5287
5212
-
Glu
CTC
[ENA]
¡û
Identical group No.832048 (1 seq.)
>C211198510
CP065014
Chlorobiota
Chlorobi bacterium [CP065014]
1806355
1806427
+
Glu
CTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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