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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlorobiota
Anticodon = GAT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.286138 (2 seq.)
>W1610552320
JYPE01000015
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
74478
74553
+
Ile
GAT
[ENA]
¡û
>W1710662985
JYPE01000015
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
74478
74553
+
Ile
GAT
[ENA]
¡û
Identical group No.320783 (4 seq.)
>W1710856758
LLZP01000025
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
7425
7499
+
Ile
GAT
[ENA]
¡û
>W1711505234
MKVH01000023
Unclassified
'Candidatus Kapabacteria' thiocyanatum sp. 59-99 [MKVH]
2067
2143
+
Ile
GAT
[ENA]
¡û
>WENV181847882
OGVZ01000555
[OGVZ] freshwater metagenome; freshwater
5327
5253
-
Ile
GAT
[ENA]
¡û
>W1610719139
LLZP01000025
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
7425
7499
+
Ile
GAT
[ENA]
¡û
Identical group No.321805 (207 seq.)
>W1711167330
LVWG01000034
Chlorobiota
Pelodictyon luteolum [LVWG]
2031
2107
+
Ile
GAT
[ENA]
¡û
>W1711167338
LVWG01000040
Chlorobiota
Pelodictyon luteolum [LVWG]
2031
2107
+
Ile
GAT
[ENA]
¡û
>W1711626088
MPJE01000067
Chlorobiota
Chlorobium sp. KB01 [MPJE]
20543
20467
-
Ile
GAT
[ENA]
¡û
>W1711626091
MPJE01000070
Chlorobiota
Chlorobium sp. KB01 [MPJE]
59985
60061
+
Ile
GAT
[ENA]
¡û
>W1711626105
MPJE01000115
Chlorobiota
Chlorobium sp. KB01 [MPJE]
2031
2107
+
Ile
GAT
[ENA]
¡û
>W1711626108
MPJE01000115
Chlorobiota
Chlorobium sp. KB01 [MPJE]
112387
112463
+
Ile
GAT
[ENA]
¡û
>C171049435
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
103318
103394
+
Ile
GAT
-
¡û
>C171049437
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
119512
119588
+
Ile
GAT
-
¡û
>C005284
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
104236
104312
+
Ile
GAT
[Ensembl]
¡û
>C016730
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
109367
109443
+
Ile
GAT
[Ensembl]
¡û
>C016732
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
118340
118416
+
Ile
GAT
[Ensembl]
¡û
>C018238
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
193441
193517
+
Ile
GAT
[Ensembl]
¡û
>w018043
AASE01000013
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
24937
25013
+
Ile
GAT
[ENA]
¡û
>w007211
AAIK01000026
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
29536
29463
-
Ile
GAT
[ENA]
¡û
>w006969
AAIC01000044
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
3864
3940
+
Ile
GAT
[ENA]
¡û
>WENV180583672
OCNB01163778
[OCNB] metagenome; diffuse fluid
43
117
+
Ile
GAT
[ENA]
¡û
>WENV181232413
OFEN01022737
[OFEN] coral metagenome; NA
85
11
-
Ile
GAT
[ENA]
¡û
>WENV181233233
OFES01000017
[OFES] coral metagenome; NA
97420
97494
+
Ile
GAT
[ENA]
¡û
>WENV181237060
OFFA01024170
[OFFA] coral metagenome; NA
1130
1056
-
Ile
GAT
[ENA]
¡û
>WENV181303884
OFHR01001305
[OFHR] coral metagenome; NA
3443
3369
-
Ile
GAT
[ENA]
¡û
>C08003623
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
123121
123197
+
Ile
GAT
[Ensembl]
¡û
>C08003625
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
150770
150846
+
Ile
GAT
[Ensembl]
¡û
>C08003575
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
114580
114656
+
Ile
GAT
[Ensembl]
¡û
>C08003579
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
224967
225043
+
Ile
GAT
[Ensembl]
¡û
>C08007681
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
105723
105799
+
Ile
GAT
[Ensembl]
¡û
>C08007683
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
116826
116902
+
Ile
GAT
[Ensembl]
¡û
>C08007691
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
1186384
1186460
+
Ile
GAT
[Ensembl]
¡û
>WENV183812099
PYLN01000018
[PYLN] freshwater metagenome; meromictic lake
9867
9793
-
Ile
GAT
[ENA]
¡û
>WENV170597478
FUWD010002466
[FUWD] metagenome; unknown
411
487
+
Ile
GAT
[ENA]
¡û
>WENV170613640
FUWD012815637
[FUWD] metagenome; unknown
906
982
+
Ile
GAT
[ENA]
¡û
>WENV170613641
FUWD012815638
[FUWD] metagenome; unknown
820
896
+
Ile
GAT
[ENA]
¡û
>WENV170613643
FUWD012815639
[FUWD] metagenome; unknown
336
412
+
Ile
GAT
[ENA]
¡û
>W09103360
AAJD01000008
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
47754
47830
+
Ile
GAT
[ENA]
¡û
>W1810062294
PDNZ01000010
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
2337
2263
-
Ile
GAT
[ENA]
¡û
>SRA1018491
SRR035082.300183
454 Sequencing (SRP001803)
272
348
+
Ile
GAT
[SRA]
>SRA1019517
SRR035082.470182
454 Sequencing (SRP001803)
196
120
-
Ile
GAT
[SRA]
>SRA1019842
SRR035083.1306
454 Sequencing (SRP001804)
263
187
-
Ile
GAT
[SRA]
>SRA1020120
SRR035083.59222
454 Sequencing (SRP001804)
47
123
+
Ile
GAT
[SRA]
>SRA1020274
SRR035083.87935
454 Sequencing (SRP001804)
22
98
+
Ile
GAT
[SRA]
>SRA1020279
SRR035083.88847
454 Sequencing (SRP001804)
24
100
+
Ile
GAT
[SRA]
>SRA1020488
SRR035083.122516
454 Sequencing (SRP001804)
320
396
+
Ile
GAT
[SRA]
>SRA1020598
SRR035083.139242
454 Sequencing (SRP001804)
17
93
+
Ile
GAT
[SRA]
>SRA1020669
SRR035083.149924
454 Sequencing (SRP001804)
286
362
+
Ile
GAT
[SRA]
>SRA1020745
SRR035083.159047
454 Sequencing (SRP001804)
355
431
+
Ile
GAT
[SRA]
>SRA1020794
SRR035083.166039
454 Sequencing (SRP001804)
359
283
-
Ile
GAT
[SRA]
>SRA1020863
SRR035083.174427
454 Sequencing (SRP001804)
286
362
+
Ile
GAT
[SRA]
>SRA1020873
SRR035083.176407
454 Sequencing (SRP001804)
183
259
+
Ile
GAT
[SRA]
>SRA1020966
SRR035083.190986
454 Sequencing (SRP001804)
304
380
+
Ile
GAT
[SRA]
>SRA1020981
SRR035083.192803
454 Sequencing (SRP001804)
59
135
+
Ile
GAT
[SRA]
>SRA1021056
SRR035083.204367
454 Sequencing (SRP001804)
117
193
+
Ile
GAT
[SRA]
>SRA1021098
SRR035083.208808
454 Sequencing (SRP001804)
257
181
-
Ile
GAT
[SRA]
>SRA1021112
SRR035083.209471
454 Sequencing (SRP001804)
51
127
+
Ile
GAT
[SRA]
>SRA1021228
SRR035083.227011
454 Sequencing (SRP001804)
282
358
+
Ile
GAT
[SRA]
>SRA1021246
SRR035083.228244
454 Sequencing (SRP001804)
527
451
-
Ile
GAT
[SRA]
>SRA1021259
SRR035083.232030
454 Sequencing (SRP001804)
381
457
+
Ile
GAT
[SRA]
>SRA1021311
SRR035083.240394
454 Sequencing (SRP001804)
348
272
-
Ile
GAT
[SRA]
>SRA1021353
SRR035083.247310
454 Sequencing (SRP001804)
368
444
+
Ile
GAT
[SRA]
>SRA1021384
SRR035083.253540
454 Sequencing (SRP001804)
129
53
-
Ile
GAT
[SRA]
>SRA1021385
SRR035083.253604
454 Sequencing (SRP001804)
200
124
-
Ile
GAT
[SRA]
>SRA1021400
SRR035083.254629
454 Sequencing (SRP001804)
105
181
+
Ile
GAT
[SRA]
>SRA1021417
SRR035083.255976
454 Sequencing (SRP001804)
266
342
+
Ile
GAT
[SRA]
>SRA1021436
SRR035083.258247
454 Sequencing (SRP001804)
121
45
-
Ile
GAT
[SRA]
>SRA1021439
SRR035083.258492
454 Sequencing (SRP001804)
367
291
-
Ile
GAT
[SRA]
>SRA1021546
SRR035083.271222
454 Sequencing (SRP001804)
347
423
+
Ile
GAT
[SRA]
>SRA1021585
SRR035083.276833
454 Sequencing (SRP001804)
113
189
+
Ile
GAT
[SRA]
>SRA1021595
SRR035083.278808
454 Sequencing (SRP001804)
238
162
-
Ile
GAT
[SRA]
>SRA1021632
SRR035083.283844
454 Sequencing (SRP001804)
272
196
-
Ile
GAT
[SRA]
>SRA1021705
SRR035083.295877
454 Sequencing (SRP001804)
273
197
-
Ile
GAT
[SRA]
>SRA1021733
SRR035083.298669
454 Sequencing (SRP001804)
173
249
+
Ile
GAT
[SRA]
>SRA1021738
SRR035083.299569
454 Sequencing (SRP001804)
344
420
+
Ile
GAT
[SRA]
>SRA1021874
SRR035083.321445
454 Sequencing (SRP001804)
262
186
-
Ile
GAT
[SRA]
>SRA1021917
SRR035083.327783
454 Sequencing (SRP001804)
366
442
+
Ile
GAT
[SRA]
>SRA1021962
SRR035083.332279
454 Sequencing (SRP001804)
61
137
+
Ile
GAT
[SRA]
>SRA1022059
SRR035083.347064
454 Sequencing (SRP001804)
183
259
+
Ile
GAT
[SRA]
>SRA1022102
SRR035083.353921
454 Sequencing (SRP001804)
295
371
+
Ile
GAT
[SRA]
>SRA1022197
SRR035083.367047
454 Sequencing (SRP001804)
259
335
+
Ile
GAT
[SRA]
>SRA1022199
SRR035083.367059
454 Sequencing (SRP001804)
63
139
+
Ile
GAT
[SRA]
>SRA1022235
SRR035083.372563
454 Sequencing (SRP001804)
20
96
+
Ile
GAT
[SRA]
>SRA1022248
SRR035083.374229
454 Sequencing (SRP001804)
145
221
+
Ile
GAT
[SRA]
>SRA1022280
SRR035083.380758
454 Sequencing (SRP001804)
312
388
+
Ile
GAT
[SRA]
>SRA1022287
SRR035083.382420
454 Sequencing (SRP001804)
295
371
+
Ile
GAT
[SRA]
>SRA1022485
SRR035083.412405
454 Sequencing (SRP001804)
60
136
+
Ile
GAT
[SRA]
>SRA1022508
SRR035083.415896
454 Sequencing (SRP001804)
117
193
+
Ile
GAT
[SRA]
>SRA1022594
SRR035083.430197
454 Sequencing (SRP001804)
5
81
+
Ile
GAT
[SRA]
>SRA1022651
SRR035083.437173
454 Sequencing (SRP001804)
308
381
+
Ile
GAT
[SRA]
>SRA1022657
SRR035083.438098
454 Sequencing (SRP001804)
349
425
+
Ile
GAT
[SRA]
>SRA1022673
SRR035083.440301
454 Sequencing (SRP001804)
86
162
+
Ile
GAT
[SRA]
>SRA1022728
SRR035083.449270
454 Sequencing (SRP001804)
139
215
+
Ile
GAT
[SRA]
>SRA1022768
SRR035083.456733
454 Sequencing (SRP001804)
87
163
+
Ile
GAT
[SRA]
>SRA1022795
SRR035083.461803
454 Sequencing (SRP001804)
66
142
+
Ile
GAT
[SRA]
>SRA1022805
SRR035083.463727
454 Sequencing (SRP001804)
341
417
+
Ile
GAT
[SRA]
>SRA1022886
SRR035083.478140
454 Sequencing (SRP001804)
45
121
+
Ile
GAT
[SRA]
>SRA1023041
SRR035083.510820
454 Sequencing (SRP001804)
14
90
+
Ile
GAT
[SRA]
>SRA1023061
SRR035083.513776
454 Sequencing (SRP001804)
203
127
-
Ile
GAT
[SRA]
>SRA1023069
SRR035083.514649
454 Sequencing (SRP001804)
249
325
+
Ile
GAT
[SRA]
>SRA1023071
SRR035083.515527
454 Sequencing (SRP001804)
146
222
+
Ile
GAT
[SRA]
>SRA1023084
SRR035083.516988
454 Sequencing (SRP001804)
342
418
+
Ile
GAT
[SRA]
>SRA1030063
SRR035087.222513
454 Sequencing (SRP001808)
287
211
-
Ile
GAT
[SRA]
>SRA1032439
SRR035088.11044
454 Sequencing (SRP001809)
106
30
-
Ile
GAT
[SRA]
>SRA1033218
SRR035088.198836
454 Sequencing (SRP001809)
178
102
-
Ile
GAT
[SRA]
>SRA1033296
SRR035088.217448
454 Sequencing (SRP001809)
228
304
+
Ile
GAT
[SRA]
>SRA1035635
SRR035089.344210
454 Sequencing (SRP001810)
174
250
+
Ile
GAT
[SRA]
>SRA1035640
SRR035089.347245
454 Sequencing (SRP001810)
345
269
-
Ile
GAT
[SRA]
>W2010532701
JAAORA010000001
Chlorobiota
Chlorobium sp. BLA1 [JAAORA]
613716
613642
-
Ile
GAT
[ENA]
¡û
>W2010532704
JAAORA010000001
Chlorobiota
Chlorobium sp. BLA1 [JAAORA]
506680
506606
-
Ile
GAT
[ENA]
¡û
>SRA1036695
SRR035089.586264
454 Sequencing (SRP001810)
131
55
-
Ile
GAT
[SRA]
>SRA1036803
SRR035090.10667
454 Sequencing (SRP001811)
2
78
+
Ile
GAT
[SRA]
>SRA1036814
SRR035090.13104
454 Sequencing (SRP001811)
305
229
-
Ile
GAT
[SRA]
>SRA1036890
SRR035090.32579
454 Sequencing (SRP001811)
12
88
+
Ile
GAT
[SRA]
>SRA1036963
SRR035090.47739
454 Sequencing (SRP001811)
15
91
+
Ile
GAT
[SRA]
>SRA1036982
SRR035090.51930
454 Sequencing (SRP001811)
195
119
-
Ile
GAT
[SRA]
>SRA1037120
SRR035090.76786
454 Sequencing (SRP001811)
300
224
-
Ile
GAT
[SRA]
>SRA1037154
SRR035090.83759
454 Sequencing (SRP001811)
67
143
+
Ile
GAT
[SRA]
>SRA1037163
SRR035090.86718
454 Sequencing (SRP001811)
195
119
-
Ile
GAT
[SRA]
>SRA1037247
SRR035090.102008
454 Sequencing (SRP001811)
93
169
+
Ile
GAT
[SRA]
>SRA1037347
SRR035090.119971
454 Sequencing (SRP001811)
79
3
-
Ile
GAT
[SRA]
>SRA1037402
SRR035090.128933
454 Sequencing (SRP001811)
388
464
+
Ile
GAT
[SRA]
>SRA1037452
SRR035090.136783
454 Sequencing (SRP001811)
2
78
+
Ile
GAT
[SRA]
>SRA1037467
SRR035090.138299
454 Sequencing (SRP001811)
294
218
-
Ile
GAT
[SRA]
>SRA1037488
SRR035090.141678
454 Sequencing (SRP001811)
80
4
-
Ile
GAT
[SRA]
>SRA1037500
SRR035090.143048
454 Sequencing (SRP001811)
195
119
-
Ile
GAT
[SRA]
>SRA1037503
SRR035090.143272
454 Sequencing (SRP001811)
90
166
+
Ile
GAT
[SRA]
>SRA1037607
SRR035090.162858
454 Sequencing (SRP001811)
179
103
-
Ile
GAT
[SRA]
>SRA1037625
SRR035090.165079
454 Sequencing (SRP001811)
292
216
-
Ile
GAT
[SRA]
>SRA1037631
SRR035090.165651
454 Sequencing (SRP001811)
39
115
+
Ile
GAT
[SRA]
>SRA1037637
SRR035090.166679
454 Sequencing (SRP001811)
294
218
-
Ile
GAT
[SRA]
>SRA1037656
SRR035090.170340
454 Sequencing (SRP001811)
67
143
+
Ile
GAT
[SRA]
>SRA1037695
SRR035090.175589
454 Sequencing (SRP001811)
319
243
-
Ile
GAT
[SRA]
>SRA1037849
SRR035090.204596
454 Sequencing (SRP001811)
291
215
-
Ile
GAT
[SRA]
>SRA1037933
SRR035090.220887
454 Sequencing (SRP001811)
17
93
+
Ile
GAT
[SRA]
>SRA1037981
SRR035090.229079
454 Sequencing (SRP001811)
339
263
-
Ile
GAT
[SRA]
>SRA1038080
SRR035090.242652
454 Sequencing (SRP001811)
271
195
-
Ile
GAT
[SRA]
>SRA1038092
SRR035090.243603
454 Sequencing (SRP001811)
333
409
+
Ile
GAT
[SRA]
>SRA1038117
SRR035090.248488
454 Sequencing (SRP001811)
10
86
+
Ile
GAT
[SRA]
>SRA1038139
SRR035090.252980
454 Sequencing (SRP001811)
317
393
+
Ile
GAT
[SRA]
>SRA1038158
SRR035090.255755
454 Sequencing (SRP001811)
290
214
-
Ile
GAT
[SRA]
>SRA1038171
SRR035090.258120
454 Sequencing (SRP001811)
246
322
+
Ile
GAT
[SRA]
>SRA1038223
SRR035090.267512
454 Sequencing (SRP001811)
244
320
+
Ile
GAT
[SRA]
>SRA1038230
SRR035090.268544
454 Sequencing (SRP001811)
26
102
+
Ile
GAT
[SRA]
>SRA1038261
SRR035090.275969
454 Sequencing (SRP001811)
10
86
+
Ile
GAT
[SRA]
>SRA1038290
SRR035090.280593
454 Sequencing (SRP001811)
237
313
+
Ile
GAT
[SRA]
>SRA1038323
SRR035090.287895
454 Sequencing (SRP001811)
195
119
-
Ile
GAT
[SRA]
>SRA1038340
SRR035090.289781
454 Sequencing (SRP001811)
139
215
+
Ile
GAT
[SRA]
>SRA1038349
SRR035090.290620
454 Sequencing (SRP001811)
336
260
-
Ile
GAT
[SRA]
>SRA1038402
SRR035090.297976
454 Sequencing (SRP001811)
318
394
+
Ile
GAT
[SRA]
>SRA1038456
SRR035090.309194
454 Sequencing (SRP001811)
26
102
+
Ile
GAT
[SRA]
>SRA1038514
SRR035090.319197
454 Sequencing (SRP001811)
340
264
-
Ile
GAT
[SRA]
>SRA1038578
SRR035090.330559
454 Sequencing (SRP001811)
248
324
+
Ile
GAT
[SRA]
>SRA1038587
SRR035090.332113
454 Sequencing (SRP001811)
269
345
+
Ile
GAT
[SRA]
>SRA1038597
SRR035090.333413
454 Sequencing (SRP001811)
209
133
-
Ile
GAT
[SRA]
>SRA1038639
SRR035090.341966
454 Sequencing (SRP001811)
82
6
-
Ile
GAT
[SRA]
>SRA1038670
SRR035090.347585
454 Sequencing (SRP001811)
17
93
+
Ile
GAT
[SRA]
>SRA1038710
SRR035090.353371
454 Sequencing (SRP001811)
26
102
+
Ile
GAT
[SRA]
>SRA1038783
SRR035090.364795
454 Sequencing (SRP001811)
221
145
-
Ile
GAT
[SRA]
>SRA1038815
SRR035090.371724
454 Sequencing (SRP001811)
3
79
+
Ile
GAT
[SRA]
>SRA1038994
SRR035090.405809
454 Sequencing (SRP001811)
17
93
+
Ile
GAT
[SRA]
>SRA1039024
SRR035090.409902
454 Sequencing (SRP001811)
349
425
+
Ile
GAT
[SRA]
>SRA1039025
SRR035090.410077
454 Sequencing (SRP001811)
39
115
+
Ile
GAT
[SRA]
>SRA1039034
SRR035090.411845
454 Sequencing (SRP001811)
139
215
+
Ile
GAT
[SRA]
>SRA1039278
SRR035090.457000
454 Sequencing (SRP001811)
237
313
+
Ile
GAT
[SRA]
>SRA1039291
SRR035090.459855
454 Sequencing (SRP001811)
112
36
-
Ile
GAT
[SRA]
>SRA1039303
SRR035090.464298
454 Sequencing (SRP001811)
172
248
+
Ile
GAT
[SRA]
>SRA1039313
SRR035090.465179
454 Sequencing (SRP001811)
30
106
+
Ile
GAT
[SRA]
>SRA1039379
SRR035090.480235
454 Sequencing (SRP001811)
356
432
+
Ile
GAT
[SRA]
>SRA1039457
SRR035090.496206
454 Sequencing (SRP001811)
272
196
-
Ile
GAT
[SRA]
>SRA1039578
SRR035090.519867
454 Sequencing (SRP001811)
157
81
-
Ile
GAT
[SRA]
>SRA1039596
SRR035090.524223
454 Sequencing (SRP001811)
305
381
+
Ile
GAT
[SRA]
>SRA1039632
SRR035090.533389
454 Sequencing (SRP001811)
1
77
+
Ile
GAT
[SRA]
>SRA1039662
SRR035090.538674
454 Sequencing (SRP001811)
139
215
+
Ile
GAT
[SRA]
>SRA1039867
SRR035090.587500
454 Sequencing (SRP001811)
322
398
+
Ile
GAT
[SRA]
>SRA1039871
SRR035090.588749
454 Sequencing (SRP001811)
15
91
+
Ile
GAT
[SRA]
>SRA1040664
SRR035091.129829
454 Sequencing (SRP001812)
504
428
-
Ile
GAT
[SRA]
>SRA1042208
SRR035091.356218
454 Sequencing (SRP001812)
263
339
+
Ile
GAT
[SRA]
>SRA1045244
SRR035093.40650
454 Sequencing (SRP001814)
128
52
-
Ile
GAT
[SRA]
>W2011502956
RXYJ01000027
Chlorobiota
Chlorobium phaeovibrioides GrKhr17 [RXYJ]
1776
1850
+
Ile
GAT
[ENA]
¡û
>W2011503001
RXYK01000030
Chlorobiota
Chlorobium phaeovibrioides BrKhr17 [RXYK]
3527
3453
-
Ile
GAT
[ENA]
¡û
>W2011543775
SDGU01000071
Chlorobiota
Chlorobaculum sp. 24CR [SDGU]
1860
1935
+
Ile
GAT
[ENA]
¡û
>W2011610006
SJPA01000035
Chlorobiota
Chlorobium sp. N1 [SJPA]
858
784
-
Ile
GAT
[ENA]
¡û
>SRA1047108
SRR035093.458513
454 Sequencing (SRP001814)
92
16
-
Ile
GAT
[SRA]
>W2011980188
VDCH01000046
Chlorobiota
Chlorobaculum thiosulfatiphilum DSM 249 [VDCH]
2189
2264
+
Ile
GAT
[ENA]
¡û
>W2011980209
VDCI01000005
Chlorobiota
Prosthecochloris vibrioformis DSM 260 [VDCI]
83461
83387
-
Ile
GAT
[ENA]
¡û
>W2011980211
VDCI01000005
Chlorobiota
Prosthecochloris vibrioformis DSM 260 [VDCI]
75785
75711
-
Ile
GAT
[ENA]
¡û
>W2012093206
VMRG01000001
Chlorobiota
Chlorobium phaeovibrioides GrTcv12 [VMRG]
192594
192668
+
Ile
GAT
[ENA]
¡û
>W2012093208
VMRG01000001
Chlorobiota
Chlorobium phaeovibrioides GrTcv12 [VMRG]
198393
198467
+
Ile
GAT
[ENA]
¡û
>SRA1054008
SRR035099.33878
454 Sequencing (SRP001820)
222
146
-
Ile
GAT
[SRA]
>SRA1054194
SRR035099.81167
454 Sequencing (SRP001820)
114
38
-
Ile
GAT
[SRA]
>SRA1054268
SRR035099.96071
454 Sequencing (SRP001820)
108
32
-
Ile
GAT
[SRA]
>SRA1054276
SRR035099.97766
454 Sequencing (SRP001820)
113
189
+
Ile
GAT
[SRA]
>SRA1054302
SRR035099.102524
454 Sequencing (SRP001820)
314
238
-
Ile
GAT
[SRA]
>SRA1054340
SRR035099.109643
454 Sequencing (SRP001820)
269
193
-
Ile
GAT
[SRA]
>SRA1054412
SRR035099.128778
454 Sequencing (SRP001820)
441
365
-
Ile
GAT
[SRA]
>SRA1054450
SRR035099.135142
454 Sequencing (SRP001820)
441
365
-
Ile
GAT
[SRA]
>SRA1054472
SRR035099.139719
454 Sequencing (SRP001820)
204
280
+
Ile
GAT
[SRA]
>SRA1054538
SRR035099.158303
454 Sequencing (SRP001820)
108
32
-
Ile
GAT
[SRA]
>SRA1054707
SRR035099.191305
454 Sequencing (SRP001820)
90
166
+
Ile
GAT
[SRA]
>SRA1054735
SRR035099.201881
454 Sequencing (SRP001820)
214
290
+
Ile
GAT
[SRA]
>SRA1054816
SRR035099.221040
454 Sequencing (SRP001820)
291
367
+
Ile
GAT
[SRA]
>W2012440420
WUBZ01000077
Chlorobiota
Chlorobium phaeovibrioides ZM [WUBZ]
628
702
+
Ile
GAT
[ENA]
¡û
>C201100869
CP041698
Chlorobiota
Chlorobium phaeovibrioides PhvTcv-s14 [CP041698]
1878891
1878817
-
Ile
GAT
-
¡û
>C201100871
CP041698
Chlorobiota
Chlorobium phaeovibrioides PhvTcv-s14 [CP041698]
1873099
1873025
-
Ile
GAT
-
¡û
>C201100873
CP041698
Chlorobiota
Chlorobium phaeovibrioides PhvTcv-s14 [CP041698]
1867307
1867233
-
Ile
GAT
-
¡û
>C231534700
CP110622
Chlorobiota
Prosthecochloris sp. SCSIO W1103 [CP110622]
116282
116356
+
Ile
GAT
-
¡û
>C231534702
CP110622
Chlorobiota
Prosthecochloris sp. SCSIO W1103 [CP110622]
140532
140606
+
Ile
GAT
-
¡û
>C231534746
CP110623
Chlorobiota
Prosthecochloris sp. SCSIO W1101 [CP110623]
126251
126325
+
Ile
GAT
-
¡û
>C231534748
CP110623
Chlorobiota
Prosthecochloris sp. SCSIO W1101 [CP110623]
148706
148780
+
Ile
GAT
-
¡û
>W1610977661
LVWG01000034
Chlorobiota
Pelodictyon luteolum [LVWG]
2031
2107
+
Ile
GAT
[ENA]
¡û
>W1610977669
LVWG01000040
Chlorobiota
Pelodictyon luteolum [LVWG]
2031
2107
+
Ile
GAT
[ENA]
¡û
Identical group No.334091 (36 seq.)
>W1710859002
LMBR01000120
Chlorobiota
Chlorobium limicola [LMBR]
3659
3583
-
Ile
GAT
[ENA]
¡û
>W1711136054
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
517453
517377
-
Ile
GAT
[ENA]
¡û
>C171060548
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
71853
71929
+
Ile
GAT
-
¡û
>C171060572
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
2646035
2645959
-
Ile
GAT
-
¡û
>C171113983
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
122861
122937
+
Ile
GAT
-
¡û
>C171113985
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
130690
130766
+
Ile
GAT
-
¡û
>C006601
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
3050708
3050632
-
Ile
GAT
[Ensembl]
¡û
>C006603
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
2898573
2898497
-
Ile
GAT
[Ensembl]
¡û
>C007002
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
141140
141216
+
Ile
GAT
[Ensembl]
¡û
>C007030
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
2035176
2035100
-
Ile
GAT
[Ensembl]
¡û
>w007142
AAIJ01000002
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
150586
150508
-
Ile
GAT
[ENA]
¡û
>w006124
AAHJ01000048
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
6602
6678
+
Ile
GAT
[ENA]
¡û
>C08003483
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
114662
114738
+
Ile
GAT
[Ensembl]
¡û
>C08003485
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
160230
160306
+
Ile
GAT
[Ensembl]
¡û
>C08003828
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
907142
907066
-
Ile
GAT
[Ensembl]
¡û
>C08007144
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
149196
149272
+
Ile
GAT
[Ensembl]
¡û
>WENV183515073
OMKS01045019
[OMKS] sediment metagenome; hot spring sediment
898
972
+
Ile
GAT
[ENA]
¡û
>WENV183515501
OMKS01068606
[OMKS] sediment metagenome; hot spring sediment
139
213
+
Ile
GAT
[ENA]
¡û
>WENV183715781
PDWI01262780
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
203
277
+
Ile
GAT
[ENA]
¡û
>WENV183722454
PDWJ01130448
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
884
810
-
Ile
GAT
[ENA]
¡û
>WENV170604346
FUWD010388947
[FUWD] metagenome; unknown
234
158
-
Ile
GAT
[ENA]
¡û
>WENV170614047
FUWD012824154
[FUWD] metagenome; unknown
244
320
+
Ile
GAT
[ENA]
¡û
>WENV170614049
FUWD012824155
[FUWD] metagenome; unknown
5
81
+
Ile
GAT
[ENA]
¡û
>WENV170619441
FUWD013014370
[FUWD] metagenome; unknown
801
725
-
Ile
GAT
[ENA]
¡û
>C181068759
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
130760
130834
+
Ile
GAT
-
¡û
>C181068761
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
149603
149677
+
Ile
GAT
-
¡û
>W09102676
AAIB01000050
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
7405
7481
+
Ile
GAT
[ENA]
¡û
>W1810062185
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
2262724
2262650
-
Ile
GAT
[ENA]
¡û
>W1810062229
PDNY01000012
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
4340
4266
-
Ile
GAT
[ENA]
¡û
>W2010640209
JABVZQ010000033
Chlorobiota
Prosthecochloris sp. DSM 1685 [JABVZQ]
2127
2201
+
Ile
GAT
[ENA]
¡û
>W2110315975
JADGIH010000031
Chlorobiota
Prosthecochloris ethylica N2 [JADGIH]
3509
3435
-
Ile
GAT
[ENA]
¡û
>W2110316020
JADGII010000042
Chlorobiota
Prosthecochloris ethylica N3 [JADGII]
2210
2284
+
Ile
GAT
[ENA]
¡û
>C231486366
CP104202
Chlorobiota
Chlorobaculum sp. MV4-Y [CP104202]
68089
68164
+
Ile
GAT
-
¡û
>C231486394
CP104202
Chlorobiota
Chlorobaculum sp. MV4-Y [CP104202]
2013197
2013122
-
Ile
GAT
-
¡û
>W1610721348
LMBR01000120
Chlorobiota
Chlorobium limicola [LMBR]
3659
3583
-
Ile
GAT
[ENA]
¡û
>W1610947174
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
517453
517377
-
Ile
GAT
[ENA]
¡û
Identical group No.384933 (3 seq.)
>WENV170000653
AFSR01001300
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
17719
17793
+
Ile
GAT
[ENA]
¡û
>W141803645
JPGV01000041
Chlorobiota
[Candidatus Thermochlorobacteriaceae] bacterium GBChlB GBChlB [JPGV]
23585
23661
+
Ile
GAT
[ENA]
¡û
>WENV11100996
AFSR01001300
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
17719
17793
+
Ile
GAT
[ENA]
¡û
Identical group No.402968 (1 seq.)
>w006981
AAIC01000226
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
2460
2538
+
Ile
GAT
[ENA]
¡û
Identical group No.444267 (4 seq.)
>W1710856713
LLZO01000036
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
3627
3553
-
Ile
GAT
[ENA]
¡û
>WENV181171151
OEIV010156039
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
424
350
-
Ile
GAT
[ENA]
¡û
>WENV170557900
CXWL01041892
[CXWL] groundwater metagenome; biofilm material
1220
1294
+
Ile
GAT
[ENA]
¡û
>W1610719094
LLZO01000036
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
3627
3553
-
Ile
GAT
[ENA]
¡û
Identical group No.449135 (2 seq.)
>W1610594317
LDXS01000003
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
143107
143031
-
Ile
GAT
[ENA]
¡û
>W1710713769
LDXS01000003
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
143107
143031
-
Ile
GAT
[ENA]
¡û
Identical group No.450348 (1 seq.)
>C211198497
CP065014
Chlorobiota
Chlorobi bacterium [CP065014]
280607
280681
+
Ile
GAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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