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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlorobiota
Anticodon = GCT
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10562 (12 seq.)
>C171113999
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
945552
945645
+
Ser
GCT
-
¡û
>w007152
AAIJ01000004
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
81030
80937
-
Ser
GCT
[ENA]
¡û
>w006954
AAIC01000017
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
10665
10575
-
Ser
GCT
[ENA]
¡û
>WENV181232325
OFEN01000046
[OFEN] coral metagenome; NA
7820
7729
-
Ser
GCT
[ENA]
¡û
>WENV181303865
OFHR01000025
[OFHR] coral metagenome; NA
36507
36598
+
Ser
GCT
[ENA]
¡û
>C08003639
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
1139882
1139975
+
Ser
GCT
[Ensembl]
¡û
>C08007166
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
1560778
1560869
+
Ser
GCT
[Ensembl]
¡û
>WENV183515255
OMKS01053881
[OMKS] sediment metagenome; hot spring sediment
1471
1380
-
Ser
GCT
[ENA]
¡û
>W1810062199
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
937152
937061
-
Ser
GCT
[ENA]
¡û
>W1810062274
PDNZ01000004
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
40616
40525
-
Ser
GCT
[ENA]
¡û
>C231534734
CP110622
Chlorobiota
Prosthecochloris sp. SCSIO W1103 [CP110622]
1633393
1633302
-
Ser
GCT
-
¡û
>C231534780
CP110623
Chlorobiota
Prosthecochloris sp. SCSIO W1101 [CP110623]
1767829
1767738
-
Ser
GCT
-
¡û
Identical group No.11756 (2 seq.)
>WENV180015061
FQKF010298856
[FQKF] soil metagenome; Soil
349
440
+
Ser
GCT
[ENA]
¡û
>W141803641
JPGV01000030
Chlorobiota
[Candidatus Thermochlorobacteriaceae] bacterium GBChlB GBChlB [JPGV]
36554
36645
+
Ser
GCT
[ENA]
¡û
Identical group No.12309 (1 seq.)
>C181068775
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
900654
900745
+
Ser
GCT
-
¡û
Identical group No.13186 (4 seq.)
>W1810062213
PDNY01000002
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
114733
114642
-
Ser
GCT
[ENA]
¡û
>W2010640171
JABVZQ010000001
Chlorobiota
Prosthecochloris sp. DSM 1685 [JABVZQ]
152384
152293
-
Ser
GCT
[ENA]
¡û
>W2110315936
JADGIH010000001
Chlorobiota
Prosthecochloris ethylica N2 [JADGIH]
152493
152402
-
Ser
GCT
[ENA]
¡û
>W2110315986
JADGII010000004
Chlorobiota
Prosthecochloris ethylica N3 [JADGII]
47333
47242
-
Ser
GCT
[ENA]
¡û
Identical group No.13273 (2 seq.)
>W1610594328
LDXS01000010
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
982
1073
+
Ser
GCT
[ENA]
¡û
>W1710713780
LDXS01000010
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
982
1073
+
Ser
GCT
[ENA]
¡û
Identical group No.15360 (2 seq.)
>W1710856756
LLZP01000019
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
44200
44110
-
Ser
GCT
[ENA]
¡û
>W1610719137
LLZP01000019
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
44200
44110
-
Ser
GCT
[ENA]
¡û
Identical group No.15468 (2 seq.)
>w018036
AASE01000009
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
1855
1766
-
Ser
GCT
[ENA]
¡û
>W2010532738
JAAORA010000005
Chlorobiota
Chlorobium sp. BLA1 [JAAORA]
169214
169304
+
Ser
GCT
[ENA]
¡û
Identical group No.15997 (10 seq.)
>C006609
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
1850311
1850219
-
Ser
GCT
[Ensembl]
¡û
>C018271
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1189979
1189890
-
Ser
GCT
[Ensembl]
¡û
>w006103
AAHJ01000006
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
114748
114659
-
Ser
GCT
[ENA]
¡û
>C08003519
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
1592771
1592679
-
Ser
GCT
[Ensembl]
¡û
>W09102659
AAIB01000010
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
15849
15757
-
Ser
GCT
[ENA]
¡û
>W09103367
AAJD01000012
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
2498
2408
-
Ser
GCT
[ENA]
¡û
>W2011502920
RXYJ01000001
Chlorobiota
Chlorobium phaeovibrioides GrKhr17 [RXYJ]
179008
179098
+
Ser
GCT
[ENA]
¡û
>W2011502995
RXYK01000013
Chlorobiota
Chlorobium phaeovibrioides BrKhr17 [RXYK]
64781
64871
+
Ser
GCT
[ENA]
¡û
>W2012440418
WUBZ01000028
Chlorobiota
Chlorobium phaeovibrioides ZM [WUBZ]
17310
17400
+
Ser
GCT
[ENA]
¡û
>C201100858
CP041698
Chlorobiota
Chlorobium phaeovibrioides PhvTcv-s14 [CP041698]
844762
844852
+
Ser
GCT
-
¡û
Identical group No.16454 (4 seq.)
>W1711167313
LVWG01000027
Chlorobiota
Pelodictyon luteolum [LVWG]
58222
58314
+
Ser
GCT
[ENA]
¡û
>C016744
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
909256
909348
+
Ser
GCT
[Ensembl]
¡û
>WENV170613759
FUWD012818317
[FUWD] metagenome; unknown
911
1003
+
Ser
GCT
[ENA]
¡û
>W1610977644
LVWG01000027
Chlorobiota
Pelodictyon luteolum [LVWG]
58222
58314
+
Ser
GCT
[ENA]
¡û
Identical group No.16455 (1 seq.)
>C08003826
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
1405107
1405015
-
Ser
GCT
[Ensembl]
¡û
Identical group No.16457 (1 seq.)
>C005324
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
570318
570229
-
Ser
GCT
[Ensembl]
¡û
Identical group No.17212 (1 seq.)
>W2012093236
VMRG01000001
Chlorobiota
Chlorobium phaeovibrioides GrTcv12 [VMRG]
1309007
1308917
-
Ser
GCT
[ENA]
¡û
Identical group No.19145 (3 seq.)
>C171060560
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
1013263
1013355
+
Ser
GCT
-
¡û
>W2011543779
SDGU01000103
Chlorobiota
Chlorobaculum sp. 24CR [SDGU]
10041
9951
-
Ser
GCT
[ENA]
¡û
>W2011980156
VDCH01000006
Chlorobiota
Chlorobaculum thiosulfatiphilum DSM 249 [VDCH]
91757
91667
-
Ser
GCT
[ENA]
¡û
Identical group No.19175 (4 seq.)
>W1711136047
LUZT01000004
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
87310
87400
+
Ser
GCT
[ENA]
¡û
>C007036
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
1208632
1208543
-
Ser
GCT
[Ensembl]
¡û
>C231486378
CP104202
Chlorobiota
Chlorobaculum sp. MV4-Y [CP104202]
720844
720934
+
Ser
GCT
-
¡û
>W1610947167
LUZT01000004
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
87310
87400
+
Ser
GCT
[ENA]
¡û
Identical group No.19176 (1 seq.)
>C08003589
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
788074
788164
+
Ser
GCT
[Ensembl]
¡û
Identical group No.20718 (2 seq.)
>W1710856719
LLZO01000096
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
22331
22421
+
Ser
GCT
[ENA]
¡û
>W1610719100
LLZO01000096
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
22331
22421
+
Ser
GCT
[ENA]
¡û
Identical group No.20942 (2 seq.)
>w007200
AAIK01000014
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
38831
38737
-
Ser
GCT
[ENA]
¡û
>C08007722
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
1890432
1890342
-
Ser
GCT
[Ensembl]
¡û
Identical group No.21015 (1 seq.)
>C211198518
CP065014
Chlorobiota
Chlorobi bacterium [CP065014]
1914780
1914690
-
Ser
GCT
-
¡û
Identical group No.21526 (3 seq.)
>C171049474
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
794779
794689
-
Ser
GCT
-
¡û
>W2011609997
SJPA01000008
Chlorobiota
Chlorobium sp. N1 [SJPA]
20707
20797
+
Ser
GCT
[ENA]
¡û
>W2011980200
VDCI01000002
Chlorobiota
Prosthecochloris vibrioformis DSM 260 [VDCI]
225998
225908
-
Ser
GCT
[ENA]
¡û
Identical group No.28732 (2 seq.)
>W1610552305
JYPE01000009
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
164279
164188
-
Ser
GCT
[ENA]
¡û
>W1710662970
JYPE01000009
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
164279
164188
-
Ser
GCT
[ENA]
¡û
Identical group No.67193 (2 seq.)
>W1711393288
MEOL01000034
Bacteroidota
Bacteroidetes bacterium GWF2_41_31 [MEOL]
147147
147236
+
Ser
GCT
[ENA]
¡û
>w006984
AAIC01000528
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
1251
1160
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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