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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlorobiota
Anticodon = GTA
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160552 (2 seq.)
>W1610594321
LDXS01000006
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
65204
65120
-
Tyr
GTA
[ENA]
¡û
>W1710713773
LDXS01000006
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
65204
65120
-
Tyr
GTA
[ENA]
¡û
Identical group No.176181 (2 seq.)
>W1710856747
LLZP01000010
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
83405
83488
+
Tyr
GTA
[ENA]
¡û
>W1610719128
LLZP01000010
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
83405
83488
+
Tyr
GTA
[ENA]
¡û
Identical group No.178040 (3 seq.)
>w007147
AAIJ01000002
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
1542
1457
-
Tyr
GTA
[ENA]
¡û
>C08007149
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
298239
298322
+
Tyr
GTA
[Ensembl]
¡û
>W1810062178
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
2640868
2640785
-
Tyr
GTA
[ENA]
¡û
Identical group No.178041 (6 seq.)
>W1710858998
LMBR01000100
Chlorobiota
Chlorobium limicola [LMBR]
4150
4067
-
Tyr
GTA
[ENA]
¡û
>w006127
AAHJ01000052
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
79
164
+
Tyr
GTA
[ENA]
¡û
>C08003489
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
210606
210689
+
Tyr
GTA
[Ensembl]
¡û
>WENV170624597
FUWD013183728
[FUWD] metagenome; unknown
8137
8220
+
Tyr
GTA
[ENA]
¡û
>WENV170632880
FUWD013388245
[FUWD] metagenome; unknown
8137
8220
+
Tyr
GTA
[ENA]
¡û
>W1610721344
LMBR01000100
Chlorobiota
Chlorobium limicola [LMBR]
4150
4067
-
Tyr
GTA
[ENA]
¡û
Identical group No.178447 (9 seq.)
>C007005
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
152097
152179
+
Tyr
GTA
[Ensembl]
¡û
>C018257
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1795564
1795482
-
Tyr
GTA
[Ensembl]
¡û
>C08003630
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
311714
311797
+
Tyr
GTA
[Ensembl]
¡û
>W09103348
AAJD01000003
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
204399
204482
+
Tyr
GTA
[ENA]
¡û
>W2011502937
RXYJ01000002
Chlorobiota
Chlorobium phaeovibrioides GrKhr17 [RXYJ]
65828
65745
-
Tyr
GTA
[ENA]
¡û
>W2011502967
RXYK01000002
Chlorobiota
Chlorobium phaeovibrioides BrKhr17 [RXYK]
133511
133594
+
Tyr
GTA
[ENA]
¡û
>W2012093226
VMRG01000001
Chlorobiota
Chlorobium phaeovibrioides GrTcv12 [VMRG]
1883609
1883526
-
Tyr
GTA
[ENA]
¡û
>W2012440387
WUBZ01000004
Chlorobiota
Chlorobium phaeovibrioides ZM [WUBZ]
59495
59578
+
Tyr
GTA
[ENA]
¡û
>C201100845
CP041698
Chlorobiota
Chlorobium phaeovibrioides PhvTcv-s14 [CP041698]
239985
240068
+
Tyr
GTA
-
¡û
Identical group No.178760 (10 seq.)
>C171113990
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
266240
266323
+
Tyr
GTA
-
¡û
>WENV181237146
OFFA01181379
[OFFA] coral metagenome; NA
331
414
+
Tyr
GTA
[ENA]
¡û
>C181068766
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
290657
290740
+
Tyr
GTA
-
¡û
>W1810062241
PDNY01000026
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
16348
16265
-
Tyr
GTA
[ENA]
¡û
>W1810062261
PDNZ01000003
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
227291
227208
-
Tyr
GTA
[ENA]
¡û
>W2010640181
JABVZQ010000005
Chlorobiota
Prosthecochloris sp. DSM 1685 [JABVZQ]
34420
34337
-
Tyr
GTA
[ENA]
¡û
>W2110315947
JADGIH010000005
Chlorobiota
Prosthecochloris ethylica N2 [JADGIH]
140615
140698
+
Tyr
GTA
[ENA]
¡û
>W2110315990
JADGII010000005
Chlorobiota
Prosthecochloris ethylica N3 [JADGII]
16291
16208
-
Tyr
GTA
[ENA]
¡û
>C231534725
CP110622
Chlorobiota
Prosthecochloris sp. SCSIO W1103 [CP110622]
2546187
2546104
-
Tyr
GTA
-
¡û
>C231534771
CP110623
Chlorobiota
Prosthecochloris sp. SCSIO W1101 [CP110623]
2755036
2754953
-
Tyr
GTA
-
¡û
Identical group No.179230 (4 seq.)
>W1711167305
LVWG01000021
Chlorobiota
Pelodictyon luteolum [LVWG]
67420
67337
-
Tyr
GTA
[ENA]
¡û
>C016752
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
2191320
2191238
-
Tyr
GTA
[Ensembl]
¡û
>WENV170613591
FUWD012814623
[FUWD] metagenome; unknown
22214
22297
+
Tyr
GTA
[ENA]
¡û
>W1610977636
LVWG01000021
Chlorobiota
Pelodictyon luteolum [LVWG]
67420
67337
-
Tyr
GTA
[ENA]
¡û
Identical group No.179232 (1 seq.)
>C08003797
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
1378579
1378662
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.184992 (3 seq.)
>C006574
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
253022
253104
+
Tyr
GTA
[Ensembl]
¡û
>WENV170598900
FUWD010054310
[FUWD] metagenome; unknown
280
197
-
Tyr
GTA
[ENA]
¡û
>W09102643
AAIB01000004
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
40743
40660
-
Tyr
GTA
[ENA]
¡û
Identical group No.185580 (1 seq.)
>W141803626
JPGV01000010
Chlorobiota
[Candidatus Thermochlorobacteriaceae] bacterium GBChlB GBChlB [JPGV]
23580
23497
-
Tyr
GTA
[ENA]
¡û
Identical group No.187271 (2 seq.)
>W1610552316
JYPE01000015
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
31944
32027
+
Tyr
GTA
[ENA]
¡û
>W1710662981
JYPE01000015
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
31944
32027
+
Tyr
GTA
[ENA]
¡û
Identical group No.188766 (2 seq.)
>C171060551
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
82819
82902
+
Tyr
GTA
-
¡û
>W2011980173
VDCH01000017
Chlorobiota
Chlorobaculum thiosulfatiphilum DSM 249 [VDCH]
7924
8007
+
Tyr
GTA
[ENA]
¡û
Identical group No.189691 (3 seq.)
>W1710856723
LLZO01000110
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
738
655
-
Tyr
GTA
[ENA]
¡û
>WENV181168829
OEIU01824212
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
177
94
-
Tyr
GTA
[ENA]
¡û
>W1610719104
LLZO01000110
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
738
655
-
Tyr
GTA
[ENA]
¡û
Identical group No.195001 (3 seq.)
>W1711136057
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
506555
506472
-
Tyr
GTA
[ENA]
¡û
>W2011543772
SDGU01000068
Chlorobiota
Chlorobaculum sp. 24CR [SDGU]
7228
7311
+
Tyr
GTA
[ENA]
¡û
>W1610947177
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
506555
506472
-
Tyr
GTA
[ENA]
¡û
Identical group No.195418 (1 seq.)
>C211198500
CP065014
Chlorobiota
Chlorobi bacterium [CP065014]
896943
897026
+
Tyr
GTA
-
¡û
Identical group No.197086 (1 seq.)
>W2011609978
SJPA01000002
Chlorobiota
Chlorobium sp. N1 [SJPA]
105335
105252
-
Tyr
GTA
[ENA]
¡û
Identical group No.200834 (2 seq.)
>C171049442
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
263468
263551
+
Tyr
GTA
-
¡û
>W2011980216
VDCI01000006
Chlorobiota
Prosthecochloris vibrioformis DSM 260 [VDCI]
58454
58537
+
Tyr
GTA
[ENA]
¡û
Identical group No.207977 (3 seq.)
>W1711626076
MPJE01000019
Chlorobiota
Chlorobium sp. KB01 [MPJE]
35560
35478
-
Tyr
GTA
[ENA]
¡û
>w018060
AASE01000035
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
11097
11181
+
Tyr
GTA
[ENA]
¡û
>W2010532710
JAAORA010000002
Chlorobiota
Chlorobium sp. BLA1 [JAAORA]
152454
152536
+
Tyr
GTA
[ENA]
¡û
Identical group No.212121 (3 seq.)
>C005288
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
399367
399451
+
Tyr
GTA
[Ensembl]
¡û
>w007216
AAIK01000054
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
10863
10949
+
Tyr
GTA
[ENA]
¡û
>C08007710
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
2774896
2774814
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.225615 (1 seq.)
>C08012561
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
2083473
2083390
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.225742 (1 seq.)
>C181068785
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
1756805
1756889
+
Tyr
GTA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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