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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlorobiota
Anticodon = GTT
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320785 (2 seq.)
>W1710856763
LLZP01000029
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
144976
145052
+
Asn
GTT
[ENA]
¡û
>W1610719144
LLZP01000029
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
144976
145052
+
Asn
GTT
[ENA]
¡û
Identical group No.446901 (2 seq.)
>W1710887486
LMYZ01000076
Chlorobiota
Chlorobi bacterium OLB7 [LMYZ]
19903
19829
-
Asn
GTT
[ENA]
¡û
>W1610748186
LMYZ01000076
Chlorobiota
Chlorobi bacterium OLB7 [LMYZ]
19903
19829
-
Asn
GTT
[ENA]
¡û
Identical group No.449136 (2 seq.)
>W1610594326
LDXS01000007
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
67541
67465
-
Asn
GTT
[ENA]
¡û
>W1710713778
LDXS01000007
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
67541
67465
-
Asn
GTT
[ENA]
¡û
Identical group No.450347 (2 seq.)
>WENV180285855
OBID01763890
[OBID] metagenome; sludge
143
217
+
Asn
GTT
[ENA]
¡û
>C211198496
CP065014
Chlorobiota
Chlorobi bacterium [CP065014]
209087
209161
+
Asn
GTT
-
¡û
Identical group No.743149 (4 seq.)
>W1711626110
MPJE01000115
Chlorobiota
Chlorobium sp. KB01 [MPJE]
36870
36798
-
Asn
GTT
[ENA]
¡û
>C005305
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
2165727
2165798
+
Asn
GTT
[Ensembl]
¡û
>w018054
AASE01000026
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
9964
10040
+
Asn
GTT
[ENA]
¡û
>W2010532697
JAAORA010000001
Chlorobiota
Chlorobium sp. BLA1 [JAAORA]
578026
578098
+
Asn
GTT
[ENA]
¡û
Identical group No.749692 (18 seq.)
>W1711167333
LVWG01000034
Chlorobiota
Pelodictyon luteolum [LVWG]
32341
32267
-
Asn
GTT
[ENA]
¡û
>W1711415070
MHAE01000170
Ignavibacteriota
Ignavibacteria bacterium RBG_13_36_8 [MHAE]
29687
29613
-
Asn
GTT
[ENA]
¡û
>C016775
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
148637
148563
-
Asn
GTT
[Ensembl]
¡û
>C018280
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
221907
221833
-
Asn
GTT
[Ensembl]
¡û
>w007144
AAIJ01000002
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
111538
111462
-
Asn
GTT
[ENA]
¡û
>C08007146
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
188244
188318
+
Asn
GTT
[Ensembl]
¡û
>WENV183812107
PYLN01000048
[PYLN] freshwater metagenome; meromictic lake
4030
4102
+
Asn
GTT
[ENA]
¡û
>WENV170613834
FUWD012820900
[FUWD] metagenome; unknown
3829
3903
+
Asn
GTT
[ENA]
¡û
>WENV170662946
JXWW01218748
[JXWW] soil metagenome; rice field; organic GM Plot
216
290
+
Asn
GTT
[ENA]
¡û
>C181068763
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
179160
179232
+
Asn
GTT
-
¡û
>W1810062187
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
2223239
2223167
-
Asn
GTT
[ENA]
¡û
>W2011502954
RXYJ01000011
Chlorobiota
Chlorobium phaeovibrioides GrKhr17 [RXYJ]
24968
24896
-
Asn
GTT
[ENA]
¡û
>W2011502998
RXYK01000014
Chlorobiota
Chlorobium phaeovibrioides BrKhr17 [RXYK]
28738
28810
+
Asn
GTT
[ENA]
¡û
>W2011609984
SJPA01000003
Chlorobiota
Chlorobium sp. N1 [SJPA]
25689
25617
-
Asn
GTT
[ENA]
¡û
>W2012093245
VMRG01000001
Chlorobiota
Chlorobium phaeovibrioides GrTcv12 [VMRG]
226845
226773
-
Asn
GTT
[ENA]
¡û
>W2012440384
WUBZ01000001
Chlorobiota
Chlorobium phaeovibrioides ZM [WUBZ]
24849
24777
-
Asn
GTT
[ENA]
¡û
>C201100867
CP041698
Chlorobiota
Chlorobium phaeovibrioides PhvTcv-s14 [CP041698]
1837183
1837255
+
Asn
GTT
-
¡û
>W1610977664
LVWG01000034
Chlorobiota
Pelodictyon luteolum [LVWG]
32341
32267
-
Asn
GTT
[ENA]
¡û
Identical group No.749697 (16 seq.)
>W1710859004
LMBR01000126
Chlorobiota
Chlorobium limicola [LMBR]
5228
5302
+
Asn
GTT
[ENA]
¡û
>W1711136065
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
36453
36527
+
Asn
GTT
[ENA]
¡û
>C171060574
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
2604824
2604750
-
Asn
GTT
-
¡û
>C007032
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
1998467
1998393
-
Asn
GTT
[Ensembl]
¡û
>w006091
AAHJ01000001
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
19985
19909
-
Asn
GTT
[ENA]
¡û
>C08003487
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
190642
190716
+
Asn
GTT
[Ensembl]
¡û
>C08003577
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
152739
152811
+
Asn
GTT
[Ensembl]
¡û
>WENV170621439
FUWD013059356
[FUWD] metagenome; unknown
1518
1444
-
Asn
GTT
[ENA]
¡û
>WENV170624693
FUWD013185166
[FUWD] metagenome; unknown
98
24
-
Asn
GTT
[ENA]
¡û
>WENV170629622
FUWD013275612
[FUWD] metagenome; unknown
1518
1444
-
Asn
GTT
[ENA]
¡û
>WENV170632974
FUWD013389435
[FUWD] metagenome; unknown
98
24
-
Asn
GTT
[ENA]
¡û
>W2011543753
SDGU01000022
Chlorobiota
Chlorobaculum sp. 24CR [SDGU]
36939
37011
+
Asn
GTT
[ENA]
¡û
>W2011980170
VDCH01000014
Chlorobiota
Chlorobaculum thiosulfatiphilum DSM 249 [VDCH]
38126
38198
+
Asn
GTT
[ENA]
¡û
>C231486396
CP104202
Chlorobiota
Chlorobaculum sp. MV4-Y [CP104202]
1977424
1977350
-
Asn
GTT
-
¡û
>W1610721350
LMBR01000126
Chlorobiota
Chlorobium limicola [LMBR]
5228
5302
+
Asn
GTT
[ENA]
¡û
>W1610947185
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
36453
36527
+
Asn
GTT
[ENA]
¡û
Identical group No.753295 (16 seq.)
>C171113987
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
166350
166422
+
Asn
GTT
-
¡û
>WENV181232338
OFEN01000081
[OFEN] coral metagenome; NA
1932
1860
-
Asn
GTT
[ENA]
¡û
>WENV181232343
OFEN01000089
[OFEN] coral metagenome; NA
18476
18548
+
Asn
GTT
[ENA]
¡û
>WENV181233263
OFES01000046
[OFES] coral metagenome; NA
29985
30057
+
Asn
GTT
[ENA]
¡û
>WENV181233264
OFES01000049
[OFES] coral metagenome; NA
625
553
-
Asn
GTT
[ENA]
¡û
>WENV181237123
OFFA01130174
[OFFA] coral metagenome; NA
224
152
-
Asn
GTT
[ENA]
¡û
>WENV181303857
OFHR01000015
[OFHR] coral metagenome; NA
43988
43916
-
Asn
GTT
[ENA]
¡û
>WENV181303874
OFHR01000124
[OFHR] coral metagenome; NA
11030
11102
+
Asn
GTT
[ENA]
¡û
>WENV183513189
OMKS01003249
[OMKS] sediment metagenome; hot spring sediment
5585
5513
-
Asn
GTT
[ENA]
¡û
>W1810062231
PDNY01000016
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
25953
25881
-
Asn
GTT
[ENA]
¡û
>W1810062255
PDNZ01000002
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
400730
400658
-
Asn
GTT
[ENA]
¡û
>W2010640178
JABVZQ010000005
Chlorobiota
Prosthecochloris sp. DSM 1685 [JABVZQ]
140417
140345
-
Asn
GTT
[ENA]
¡û
>W2110315944
JADGIH010000005
Chlorobiota
Prosthecochloris ethylica N2 [JADGIH]
34800
34872
+
Asn
GTT
[ENA]
¡û
>W2110315987
JADGII010000005
Chlorobiota
Prosthecochloris ethylica N3 [JADGII]
122470
122398
-
Asn
GTT
[ENA]
¡û
>C231534704
CP110622
Chlorobiota
Prosthecochloris sp. SCSIO W1103 [CP110622]
173209
173281
+
Asn
GTT
-
¡û
>C231534750
CP110623
Chlorobiota
Prosthecochloris sp. SCSIO W1101 [CP110623]
181379
181451
+
Asn
GTT
-
¡û
Identical group No.754962 (1 seq.)
>C08003789
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
673443
673515
+
Asn
GTT
[Ensembl]
¡û
Identical group No.785790 (3 seq.)
>WENV170000671
AFSR01001345
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
12231
12159
-
Asn
GTT
[ENA]
¡û
>W141803633
JPGV01000018
Chlorobiota
[Candidatus Thermochlorobacteriaceae] bacterium GBChlB GBChlB [JPGV]
61078
61004
-
Asn
GTT
[ENA]
¡û
>WENV11101014
AFSR01001345
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
12231
12159
-
Asn
GTT
[ENA]
¡û
Identical group No.793725 (2 seq.)
>W1610552312
JYPE01000013
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
27200
27126
-
Asn
GTT
[ENA]
¡û
>W1710662977
JYPE01000013
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
27200
27126
-
Asn
GTT
[ENA]
¡û
Identical group No.797807 (2 seq.)
>w006977
AAIC01000090
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
2846
2770
-
Asn
GTT
[ENA]
¡û
>C08003627
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
180745
180819
+
Asn
GTT
[Ensembl]
¡û
Identical group No.830872 (2 seq.)
>C006605
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
2855296
2855225
-
Asn
GTT
[Ensembl]
¡û
>W09102653
AAIB01000008
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
32971
33043
+
Asn
GTT
[ENA]
¡û
Identical group No.833122 (1 seq.)
>C08007685
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
198415
198487
+
Asn
GTT
[Ensembl]
¡û
Identical group No.856431 (2 seq.)
>C171049439
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
147761
147833
+
Asn
GTT
-
¡û
>W2011980213
VDCI01000005
Chlorobiota
Prosthecochloris vibrioformis DSM 260 [VDCI]
47528
47456
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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