This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlorobiota
Anticodon = TAA
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.84668 (10 seq.)
>W1711136053
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
442957
443045
+
Leu
TAA
[ENA]
¡û
>W1711626084
MPJE01000066
Chlorobiota
Chlorobium sp. KB01 [MPJE]
108658
108744
+
Leu
TAA
[ENA]
¡û
>C171060595
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
183749
183661
-
Leu
TAA
-
¡û
>C007048
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
210566
210478
-
Leu
TAA
[Ensembl]
¡û
>w018028
AASE01000006
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
61212
61300
+
Leu
TAA
[ENA]
¡û
>W2010532720
JAAORA010000002
Chlorobiota
Chlorobium sp. BLA1 [JAAORA]
221635
221549
-
Leu
TAA
[ENA]
¡û
>W2011543759
SDGU01000037
Chlorobiota
Chlorobaculum sp. 24CR [SDGU]
16247
16159
-
Leu
TAA
[ENA]
¡û
>W2011980182
VDCH01000034
Chlorobiota
Chlorobaculum thiosulfatiphilum DSM 249 [VDCH]
2468
2556
+
Leu
TAA
[ENA]
¡û
>C231486413
CP104202
Chlorobiota
Chlorobaculum sp. MV4-Y [CP104202]
143945
143857
-
Leu
TAA
-
¡û
>W1610947173
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
442957
443045
+
Leu
TAA
[ENA]
¡û
Identical group No.85345 (7 seq.)
>w007168
AAIJ01000008
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
60822
60732
-
Leu
TAA
[ENA]
¡û
>C08007187
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
360577
360492
-
Leu
TAA
[Ensembl]
¡û
>W1810062176
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
2590484
2590572
+
Leu
TAA
[ENA]
¡û
>W1810062217
PDNY01000003
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
43310
43398
+
Leu
TAA
[ENA]
¡û
>W2010640207
JABVZQ010000018
Chlorobiota
Prosthecochloris sp. DSM 1685 [JABVZQ]
17985
18073
+
Leu
TAA
[ENA]
¡û
>W2110315966
JADGIH010000009
Chlorobiota
Prosthecochloris ethylica N2 [JADGIH]
95551
95463
-
Leu
TAA
[ENA]
¡û
>W2110315999
JADGII010000008
Chlorobiota
Prosthecochloris ethylica N3 [JADGII]
18242
18330
+
Leu
TAA
[ENA]
¡û
Identical group No.85347 (6 seq.)
>W1710859001
LMBR01000106
Chlorobiota
Chlorobium limicola [LMBR]
1376
1286
-
Leu
TAA
[ENA]
¡û
>w006106
AAHJ01000007
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
74302
74392
+
Leu
TAA
[ENA]
¡û
>C08003528
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
290503
290418
-
Leu
TAA
[Ensembl]
¡û
>WENV170624743
FUWD013186006
[FUWD] metagenome; unknown
23754
23844
+
Leu
TAA
[ENA]
¡û
>WENV170633025
FUWD013390159
[FUWD] metagenome; unknown
23754
23844
+
Leu
TAA
[ENA]
¡û
>W1610721347
LMBR01000106
Chlorobiota
Chlorobium limicola [LMBR]
1376
1286
-
Leu
TAA
[ENA]
¡û
Identical group No.85754 (9 seq.)
>C006617
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
366973
366885
-
Leu
TAA
[Ensembl]
¡û
>WENV181232342
OFEN01000088
[OFEN] coral metagenome; NA
18095
18183
+
Leu
TAA
[ENA]
¡û
>WENV181233242
OFES01000027
[OFES] coral metagenome; NA
61642
61554
-
Leu
TAA
[ENA]
¡û
>WENV181303854
OFHR01000011
[OFHR] coral metagenome; NA
64870
64782
-
Leu
TAA
[ENA]
¡û
>WENV181303918
OFHR01012577
[OFHR] coral metagenome; NA
1277
1189
-
Leu
TAA
[ENA]
¡û
>W09102661
AAIB01000013
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
74256
74344
+
Leu
TAA
[ENA]
¡û
>W1810062258
PDNZ01000003
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
156413
156501
+
Leu
TAA
[ENA]
¡û
>C231534721
CP110622
Chlorobiota
Prosthecochloris sp. SCSIO W1103 [CP110622]
2454451
2454539
+
Leu
TAA
-
¡û
>C231534767
CP110623
Chlorobiota
Prosthecochloris sp. SCSIO W1101 [CP110623]
2666347
2666435
+
Leu
TAA
-
¡û
Identical group No.85972 (1 seq.)
>C08003807
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
2159142
2159230
+
Leu
TAA
[Ensembl]
¡û
Identical group No.85974 (5 seq.)
>C018253
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1753991
1754079
+
Leu
TAA
[Ensembl]
¡û
>W09103374
AAJD01000016
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
29446
29358
-
Leu
TAA
[ENA]
¡û
>W2011502955
RXYJ01000017
Chlorobiota
Chlorobium phaeovibrioides GrKhr17 [RXYJ]
4271
4183
-
Leu
TAA
[ENA]
¡û
>W2011502974
RXYK01000003
Chlorobiota
Chlorobium phaeovibrioides BrKhr17 [RXYK]
1708
1620
-
Leu
TAA
[ENA]
¡û
>W2012093250
VMRG01000002
Chlorobiota
Chlorobium phaeovibrioides GrTcv12 [VMRG]
44855
44767
-
Leu
TAA
[ENA]
¡û
Identical group No.85985 (4 seq.)
>W1711167302
LVWG01000021
Chlorobiota
Pelodictyon luteolum [LVWG]
19348
19436
+
Leu
TAA
[ENA]
¡û
>C016748
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
2142997
2143085
+
Leu
TAA
[Ensembl]
¡û
>WENV170613596
FUWD012814625
[FUWD] metagenome; unknown
5293
5205
-
Leu
TAA
[ENA]
¡û
>W1610977633
LVWG01000021
Chlorobiota
Pelodictyon luteolum [LVWG]
19348
19436
+
Leu
TAA
[ENA]
¡û
Identical group No.85988 (1 seq.)
>C005300
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
1613413
1613498
+
Leu
TAA
[Ensembl]
¡û
Identical group No.89506 (1 seq.)
>W141803639
JPGV01000027
Chlorobiota
[Candidatus Thermochlorobacteriaceae] bacterium GBChlB GBChlB [JPGV]
25743
25829
+
Leu
TAA
[ENA]
¡û
Identical group No.90274 (2 seq.)
>W1610552324
JYPE01000017
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
89405
89317
-
Leu
TAA
[ENA]
¡û
>W1710662989
JYPE01000017
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
89405
89317
-
Leu
TAA
[ENA]
¡û
Identical group No.90732 (2 seq.)
>w006960
AAIC01000027
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
23733
23823
+
Leu
TAA
[ENA]
¡û
>C08003666
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
370613
370525
-
Leu
TAA
[Ensembl]
¡û
Identical group No.91054 (2 seq.)
>C171114027
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
318302
318214
-
Leu
TAA
-
¡û
>WENV183512685
OMKS01001100
[OMKS] sediment metagenome; hot spring sediment
20915
21003
+
Leu
TAA
[ENA]
¡û
Identical group No.91087 (1 seq.)
>C007049
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
204361
204273
-
Leu
TAA
[Ensembl]
¡û
Identical group No.91092 (3 seq.)
>C171049478
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
308919
308831
-
Leu
TAA
-
¡û
>C08003603
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
2018460
2018548
+
Leu
TAA
[Ensembl]
¡û
>W2011980219
VDCI01000006
Chlorobiota
Prosthecochloris vibrioformis DSM 260 [VDCI]
103903
103815
-
Leu
TAA
[ENA]
¡û
Identical group No.91099 (1 seq.)
>C181068804
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
365985
365899
-
Leu
TAA
-
¡û
Identical group No.94217 (2 seq.)
>W1710887498
LMYZ01000115
Chlorobiota
Chlorobi bacterium OLB7 [LMYZ]
31888
31800
-
Leu
TAA
[ENA]
¡û
>W1610748198
LMYZ01000115
Chlorobiota
Chlorobi bacterium OLB7 [LMYZ]
31888
31800
-
Leu
TAA
[ENA]
¡û
Identical group No.94370 (2 seq.)
>w007185
AAIK01000006
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
62647
62737
+
Leu
TAA
[ENA]
¡û
>C08007706
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
2702405
2702493
+
Leu
TAA
[Ensembl]
¡û
Identical group No.95457 (1 seq.)
>W2011609972
SJPA01000002
Chlorobiota
Chlorobium sp. N1 [SJPA]
50756
50844
+
Leu
TAA
[ENA]
¡û
Identical group No.103139 (1 seq.)
>C201100888
CP041698
Chlorobiota
Chlorobium phaeovibrioides PhvTcv-s14 [CP041698]
281587
281500
-
Leu
TAA
-
¡û
Identical group No.119042 (2 seq.)
>W1610594295
LDXS01000001
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
611718
611803
+
Leu
TAA
[ENA]
¡û
>W1710713747
LDXS01000001
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
611718
611803
+
Leu
TAA
[ENA]
¡û
Identical group No.119223 (1 seq.)
>C211198520
CP065014
Chlorobiota
Chlorobi bacterium [CP065014]
1766535
1766450
-
Leu
TAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK