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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112374 (31 seq.)
>W1711272498
LZFK01000004
Chloroflexota
Dehalococcoides mccartyi [LZFK]
24824
24738
-
Leu
CAG
[ENA]
¡û
>C171063626
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1220827
1220913
+
Leu
CAG
-
¡û
>C171100447
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1305316
1305402
+
Leu
CAG
-
¡û
>C171100493
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1271172
1271258
+
Leu
CAG
-
¡û
>C171101368
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1219606
1219692
+
Leu
CAG
-
¡û
>C171101935
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1128430
1128516
+
Leu
CAG
-
¡û
>C171101981
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1146131
1146217
+
Leu
CAG
-
¡û
>C171102522
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1197321
1197407
+
Leu
CAG
-
¡û
>C007601
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1243299
1243385
+
Leu
CAG
[Ensembl]
¡û
>C007648
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1137162
1137248
+
Leu
CAG
[Ensembl]
¡û
>C007694
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
1325203
1325289
+
Leu
CAG
[Ensembl]
¡û
>WENV170658994
JXWO01000020
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
48735
48821
+
Leu
CAG
[ENA]
¢þ
>C191160383
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1217809
1217895
+
Leu
CAG
-
¡û
>W09105031
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
48608
48694
+
Leu
CAG
[ENA]
¡û
>W141809065
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
8591
8505
-
Leu
CAG
[ENA]
¡û
>W1810107571
PHFC01000183
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1310
1396
+
Leu
CAG
[ENA]
¡û
>W1810603290
QGLC01000013
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
11407
11493
+
Leu
CAG
[ENA]
¡û
>W1810603329
QGLD01000011
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
259243
259329
+
Leu
CAG
[ENA]
¡û
>C151015224
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1150325
1150411
+
Leu
CAG
[Ensembl]
¡û
>W10109957
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
228977
229063
+
Leu
CAG
[ENA]
¡û
>C10105215
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1114761
1114847
+
Leu
CAG
[Ensembl]
¡û
>W11112394
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
228977
229063
+
Leu
CAG
[ENA]
¡û
>C161000336
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1204264
1204350
+
Leu
CAG
-
¡û
>C161031507
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1184401
1184487
+
Leu
CAG
[Ensembl]
¡û
>C131012546
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1249505
1249591
+
Leu
CAG
[Ensembl]
¡û
>C131012592
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1233446
1233532
+
Leu
CAG
[Ensembl]
¡û
>W1610520987
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
454593
454679
+
Leu
CAG
[ENA]
¡û
>W1610541325
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1133996
1134082
+
Leu
CAG
[ENA]
¡û
>W1611032026
LZFK01000004
Chloroflexota
Dehalococcoides mccartyi [LZFK]
24824
24738
-
Leu
CAG
[ENA]
¡û
>W1710617237
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
454593
454679
+
Leu
CAG
[ENA]
¡û
>W1710644456
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1133996
1134082
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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