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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653840 (41 seq.)
>W1711272465
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
644684
644612
-
Arg
CCG
[ENA]
¡û
>W1711272503
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
501772
501844
+
Arg
CCG
[ENA]
¡û
>C171019738
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
673544
673616
+
Arg
CCG
-
¡û
>C171063609
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
613267
613339
+
Arg
CCG
-
¡û
>C171100340
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
597430
597502
+
Arg
CCG
-
¡û
>C171100385
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
555108
555180
+
Arg
CCG
-
¡û
>C171100430
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
639170
639242
+
Arg
CCG
-
¡û
>C171100476
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
605026
605098
+
Arg
CCG
-
¡û
>C171101964
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
521240
521312
+
Arg
CCG
-
¡û
>C171102505
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
572256
572328
+
Arg
CCG
-
¡û
>C007584
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
646274
646345
+
Arg
CCG
[Ensembl]
¡û
>C007631
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
558994
559065
+
Arg
CCG
[Ensembl]
¡û
>C007677
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
668207
668278
+
Arg
CCG
[Ensembl]
¡û
>W08002868
ABFQ01000023
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
13227
13299
+
Arg
CCG
[ENA]
¡û
>WENV170659014
JXWO01000037
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
17678
17750
+
Arg
CCG
[ENA]
¢þ
>C181003123
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
538822
538894
+
Arg
CCG
-
¡û
>C191160366
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
592570
592642
+
Arg
CCG
-
¡û
>W09105050
AAOM01000010
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
28033
28105
+
Arg
CCG
[ENA]
¡û
>W141809048
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
578724
578652
-
Arg
CCG
[ENA]
¡û
>C141007754
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
563276
563348
+
Arg
CCG
[Ensembl]
¡û
>W1810107551
PHFC01000052
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
11463
11391
-
Arg
CCG
[ENA]
¡û
>W1810266185
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
331417
331489
+
Arg
CCG
[ENA]
¡û
>W1810603257
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
391143
391215
+
Arg
CCG
[ENA]
¡û
>W1810603299
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
477750
477822
+
Arg
CCG
[ENA]
¡û
>C151003197
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
580302
580374
+
Arg
CCG
[Ensembl]
¡û
>C151015114
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
619467
619539
+
Arg
CCG
[Ensembl]
¡û
>C151015161
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
587840
587912
+
Arg
CCG
[Ensembl]
¡û
>C151015207
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
537609
537681
+
Arg
CCG
[Ensembl]
¡û
>W10109923
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
383051
383123
+
Arg
CCG
[ENA]
¡û
>C10105198
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
584299
584371
+
Arg
CCG
[Ensembl]
¡û
>C10105244
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
592035
592107
+
Arg
CCG
[Ensembl]
¡û
>W11112360
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
383051
383123
+
Arg
CCG
[ENA]
¡û
>C161000319
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
616705
616777
+
Arg
CCG
-
¡û
>C161031490
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
578034
578106
+
Arg
CCG
[Ensembl]
¡û
>C131012529
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
679395
679467
+
Arg
CCG
[Ensembl]
¡û
>W1610521026
JGYD01000010
Chloroflexota
Dehalococcoides mccartyi [JGYD]
8462
8390
-
Arg
CCG
[ENA]
¡û
>W1610541308
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
530485
530557
+
Arg
CCG
[ENA]
¡û
>W1611031993
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
644684
644612
-
Arg
CCG
[ENA]
¡û
>W1611032031
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
501772
501844
+
Arg
CCG
[ENA]
¡û
>W1710617276
JGYD01000010
Chloroflexota
Dehalococcoides mccartyi [JGYD]
8462
8390
-
Arg
CCG
[ENA]
¡û
>W1710644439
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
530485
530557
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK