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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45754 (45 seq.)
>W1711272460
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
646366
646455
+
Ser
CGA
[ENA]
¡û
>W1711272510
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
500038
499949
-
Ser
CGA
[ENA]
¡û
>C171019772
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
671803
671714
-
Ser
CGA
-
¡û
>C171063647
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
611521
611432
-
Ser
CGA
-
¡û
>C171100377
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
595748
595659
-
Ser
CGA
-
¡û
>C171100422
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
553426
553337
-
Ser
CGA
-
¡û
>C171100468
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
637424
637335
-
Ser
CGA
-
¡û
>C171100514
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
603280
603191
-
Ser
CGA
-
¡û
>C171101389
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
613045
612956
-
Ser
CGA
-
¡û
>C171101956
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
534653
534564
-
Ser
CGA
-
¡û
>C171102002
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
519494
519405
-
Ser
CGA
-
¡û
>C171102543
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
570510
570421
-
Ser
CGA
-
¡û
>C007669
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
557248
557159
-
Ser
CGA
[Ensembl]
¡û
>C007715
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
666525
666436
-
Ser
CGA
[Ensembl]
¡û
>W08002871
ABFQ01000023
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
11486
11400
-
Ser
CGA
[ENA]
¡û
>WENV170659020
JXWO01000037
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
15932
15843
-
Ser
CGA
[ENA]
¢þ
>C181003161
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
537140
537051
-
Ser
CGA
-
¡û
>C191160404
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
590824
590735
-
Ser
CGA
-
¡û
>W141809036
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
580470
580559
+
Ser
CGA
[ENA]
¡û
>C141007792
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
561535
561446
-
Ser
CGA
[Ensembl]
¡û
>W1810107582
PHFC01000264
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
567
656
+
Ser
CGA
[ENA]
¡û
>W1810107624
PHFD01000435
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
395
484
+
Ser
CGA
[ENA]
¡û
>W1810266204
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
329735
329646
-
Ser
CGA
[ENA]
¡û
>W1810603275
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
389399
389310
-
Ser
CGA
[ENA]
¡û
>W1810603311
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
476004
475915
-
Ser
CGA
[ENA]
¡û
>C151003235
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
578561
578472
-
Ser
CGA
[Ensembl]
¡û
>C151015153
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
617726
617637
-
Ser
CGA
[Ensembl]
¡û
>C151015199
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
586158
586069
-
Ser
CGA
[Ensembl]
¡û
>C151015245
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
535863
535774
-
Ser
CGA
[Ensembl]
¡û
>W10109946
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
381305
381216
-
Ser
CGA
[ENA]
¡û
>C10105236
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
582553
582464
-
Ser
CGA
[Ensembl]
¡û
>C10105282
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
590294
590205
-
Ser
CGA
[Ensembl]
¡û
>W11112383
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
381305
381216
-
Ser
CGA
[ENA]
¡û
>C161000357
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
614959
614870
-
Ser
CGA
-
¡û
>C161031528
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
576288
576199
-
Ser
CGA
[Ensembl]
¡û
>C131012567
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
677649
677560
-
Ser
CGA
[Ensembl]
¡û
>C131012613
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
612192
612103
-
Ser
CGA
[Ensembl]
¡û
>W1610521016
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
488510
488421
-
Ser
CGA
[ENA]
¡û
>W1610521021
JGYD01000010
Chloroflexota
Dehalococcoides mccartyi [JGYD]
10144
10233
+
Ser
CGA
[ENA]
¡û
>W1610541342
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
528739
528650
-
Ser
CGA
[ENA]
¡û
>W1611031988
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
646366
646455
+
Ser
CGA
[ENA]
¡û
>W1611032038
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
500038
499949
-
Ser
CGA
[ENA]
¡û
>W1710617266
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
488510
488421
-
Ser
CGA
[ENA]
¡û
>W1710617271
JGYD01000010
Chloroflexota
Dehalococcoides mccartyi [JGYD]
10144
10233
+
Ser
CGA
[ENA]
¡û
>W1710644473
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
528739
528650
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK