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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240653 (49 seq.)
>W1711272490
LZFJ01000008
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
186272
186195
-
Pro
CGG
[ENA]
¡û
>W1711272518
LZFK01000007
Chloroflexota
Dehalococcoides mccartyi [LZFK]
52442
52365
-
Pro
CGG
[ENA]
¡û
>C171019734
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
107694
107771
+
Pro
CGG
-
¡û
>C171063631
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1369920
1369997
+
Pro
CGG
-
¡û
>C171100362
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
1324788
1324865
+
Pro
CGG
-
¡û
>C171100407
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
1267194
1267271
+
Pro
CGG
-
¡û
>C171100452
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1424061
1424138
+
Pro
CGG
-
¡û
>C171100498
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1389917
1389994
+
Pro
CGG
-
¡û
>C171101373
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1333084
1333161
+
Pro
CGG
-
¡û
>C171101940
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1355502
1355579
+
Pro
CGG
-
¡û
>C171101986
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1333329
1333406
+
Pro
CGG
-
¡û
>C171102527
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1384512
1384589
+
Pro
CGG
-
¡û
>C007606
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1337474
1337551
+
Pro
CGG
[Ensembl]
¡û
>C007653
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1391100
1391177
+
Pro
CGG
[Ensembl]
¡û
>C007699
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
1465309
1465386
+
Pro
CGG
[Ensembl]
¡û
>W08002856
ABFQ01000013
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
2897
2974
+
Pro
CGG
[ENA]
¡û
>WENV170659001
JXWO01000025
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
63269
63192
-
Pro
CGG
[ENA]
¢þ
>WENV170659068
JXWO01000166
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
7032
7109
+
Pro
CGG
[ENA]
¢þ
>C181003145
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
1383371
1383448
+
Pro
CGG
-
¡û
>C191160388
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1417956
1418033
+
Pro
CGG
-
¡û
>W09105035
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
151320
151397
+
Pro
CGG
[ENA]
¡û
>W141809044
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
1166621
1166544
-
Pro
CGG
[ENA]
¡û
>C141007776
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
1403018
1403095
+
Pro
CGG
[Ensembl]
¡û
>W1810107549
PHFC01000050
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
497
420
-
Pro
CGG
[ENA]
¡û
>W1810107611
PHFD01000221
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
679
602
-
Pro
CGG
[ENA]
¡û
>W1810266181
PQVQ01000014
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
101791
101714
-
Pro
CGG
[ENA]
¡û
>W1810603253
QGLC01000001
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
72674
72751
+
Pro
CGG
[ENA]
¡û
>W1810603295
QGLD01000001
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
45784
45861
+
Pro
CGG
[ENA]
¡û
>C151003219
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
1469147
1469224
+
Pro
CGG
[Ensembl]
¡û
>C151015137
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
1482280
1482357
+
Pro
CGG
[Ensembl]
¡û
>C151015183
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
1377897
1377974
+
Pro
CGG
[Ensembl]
¡û
>C151015229
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1357749
1357826
+
Pro
CGG
[Ensembl]
¡û
>C151081925
CP011392
Chloroflexota
Dehalogenimonas sp. WBC-2 [CP011392]
132024
132101
+
Pro
CGG
-
¡û
>W10109964
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
121202
121279
+
Pro
CGG
[ENA]
¡û
>C10105220
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1355736
1355813
+
Pro
CGG
[Ensembl]
¡û
>C10105266
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
1409057
1409134
+
Pro
CGG
[Ensembl]
¡û
>W11112401
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
121202
121279
+
Pro
CGG
[ENA]
¡û
>C161000341
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1446654
1446731
+
Pro
CGG
-
¡û
>C161031512
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1457574
1457651
+
Pro
CGG
[Ensembl]
¡û
>C131012551
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1427500
1427577
+
Pro
CGG
[Ensembl]
¡û
>C131012597
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1447933
1448010
+
Pro
CGG
[Ensembl]
¡û
>W1610520978
JGVX01000001
Chloroflexota
Dehalococcoides mccartyi [JGVX]
63024
62947
-
Pro
CGG
[ENA]
¡û
>W1610521058
JGYD01000027
Chloroflexota
Dehalococcoides mccartyi [JGYD]
71559
71636
+
Pro
CGG
[ENA]
¡û
>W1610541303
JSWM01000006
Chloroflexota
Dehalococcoides mccartyi [JSWM]
72773
72850
+
Pro
CGG
[ENA]
¡û
>W1611032018
LZFJ01000008
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
186272
186195
-
Pro
CGG
[ENA]
¡û
>W1611032046
LZFK01000007
Chloroflexota
Dehalococcoides mccartyi [LZFK]
52442
52365
-
Pro
CGG
[ENA]
¡û
>W1710617228
JGVX01000001
Chloroflexota
Dehalococcoides mccartyi [JGVX]
63024
62947
-
Pro
CGG
[ENA]
¡û
>W1710617308
JGYD01000027
Chloroflexota
Dehalococcoides mccartyi [JGYD]
71559
71636
+
Pro
CGG
[ENA]
¡û
>W1710644434
JSWM01000006
Chloroflexota
Dehalococcoides mccartyi [JSWM]
72773
72850
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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