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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653839 (45 seq.)
>W1711272464
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
917174
917100
-
Thr
CGT
[ENA]
¡û
>W1711272502
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
227615
227689
+
Thr
CGT
[ENA]
¡û
>C171019737
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
400275
400349
+
Thr
CGT
-
¡û
>C171063608
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
338988
339062
+
Thr
CGT
-
¡û
>C171100339
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
310842
310916
+
Thr
CGT
-
¡û
>C171100384
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
282601
282675
+
Thr
CGT
-
¡û
>C171100429
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
365009
365083
+
Thr
CGT
-
¡û
>C171100475
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
330865
330939
+
Thr
CGT
-
¡û
>C171101350
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
340632
340706
+
Thr
CGT
-
¡û
>C171101917
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
262424
262498
+
Thr
CGT
-
¡û
>C171101963
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
246958
247032
+
Thr
CGT
-
¡û
>C171102504
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
297973
298047
+
Thr
CGT
-
¡û
>C007583
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
372125
372199
+
Thr
CGT
[Ensembl]
¡û
>C007630
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
284708
284782
+
Thr
CGT
[Ensembl]
¡û
>C007676
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
364688
364762
+
Thr
CGT
[Ensembl]
¡û
>W08002860
ABFQ01000015
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
30993
31067
+
Thr
CGT
[ENA]
¡û
>C181003122
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
266314
266388
+
Thr
CGT
-
¡û
>W09105056
AAOM01000014
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
18681
18755
+
Thr
CGT
[ENA]
¡û
>C191160365
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
318287
318361
+
Thr
CGT
-
¡û
>W141809047
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
852951
852877
-
Thr
CGT
[ENA]
¡û
>C141007753
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
289966
290040
+
Thr
CGT
[Ensembl]
¡û
>W1810107606
PHFD01000122
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
1177
1103
-
Thr
CGT
[ENA]
¡û
>W1810266184
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
59676
59750
+
Thr
CGT
[ENA]
¡û
>W1810603256
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
117034
117108
+
Thr
CGT
[ENA]
¡û
>W1810603298
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
203692
203766
+
Thr
CGT
[ENA]
¡û
>C151003196
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
307078
307152
+
Thr
CGT
[Ensembl]
¡û
>C151015113
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
346198
346272
+
Thr
CGT
[Ensembl]
¡û
>C151015160
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
315346
315420
+
Thr
CGT
[Ensembl]
¡û
>C151015206
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
263319
263393
+
Thr
CGT
[Ensembl]
¡û
>W10109922
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
108890
108964
+
Thr
CGT
[ENA]
¡û
>C10105197
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
310138
310212
+
Thr
CGT
[Ensembl]
¡û
>C10105243
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
318882
318956
+
Thr
CGT
[Ensembl]
¡û
>W11112359
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
108890
108964
+
Thr
CGT
[ENA]
¡û
>C161000318
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
342797
342871
+
Thr
CGT
-
¡û
>C161031489
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
303751
303825
+
Thr
CGT
[Ensembl]
¡û
>C131012528
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
405113
405187
+
Thr
CGT
[Ensembl]
¡û
>C131012574
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
339785
339859
+
Thr
CGT
[Ensembl]
¡û
>W1610521002
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
216103
216177
+
Thr
CGT
[ENA]
¡û
>W1610521025
JGYD01000010
Chloroflexota
Dehalococcoides mccartyi [JGYD]
280968
280894
-
Thr
CGT
[ENA]
¡û
>W1610541307
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
256205
256279
+
Thr
CGT
[ENA]
¡û
>W1611031992
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
917174
917100
-
Thr
CGT
[ENA]
¡û
>W1611032030
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
227615
227689
+
Thr
CGT
[ENA]
¡û
>W1710617252
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
216103
216177
+
Thr
CGT
[ENA]
¡û
>W1710617275
JGYD01000010
Chloroflexota
Dehalococcoides mccartyi [JGYD]
280968
280894
-
Thr
CGT
[ENA]
¡û
>W1710644438
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
256205
256279
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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