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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271471 (37 seq.)
>W1711272449
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
307510
307586
+
Glu
CTC
[ENA]
¡û
>W1711272521
LZFK01000008
Chloroflexota
Dehalococcoides mccartyi [LZFK]
1529
1453
-
Glu
CTC
[ENA]
¡û
>C171063636
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
880950
880874
-
Glu
CTC
-
¡û
>C171100367
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
850704
850628
-
Glu
CTC
-
¡û
>C171100412
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
794233
794157
-
Glu
CTC
-
¡û
>C171100457
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
932919
932843
-
Glu
CTC
-
¡û
>C171100503
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
898775
898699
-
Glu
CTC
-
¡û
>C171101378
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
888141
888065
-
Glu
CTC
-
¡û
>C171101945
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
796721
796645
-
Glu
CTC
-
¡û
>C171101991
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
782239
782163
-
Glu
CTC
-
¡û
>C171102532
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
833227
833151
-
Glu
CTC
-
¡û
>C007611
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
895209
895133
-
Glu
CTC
[Ensembl]
¡û
>C007658
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
806493
806417
-
Glu
CTC
[Ensembl]
¡û
>C007704
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
930576
930500
-
Glu
CTC
[Ensembl]
¡û
>WENV170658986
JXWO01000006
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
2394
2318
-
Glu
CTC
[ENA]
¢þ
>C181003150
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
826253
826177
-
Glu
CTC
-
¡û
>C191160393
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
838807
838731
-
Glu
CTC
-
¡û
>W141809025
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
339422
339498
+
Glu
CTC
[ENA]
¡û
>W1810107561
PHFC01000115
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
99
23
-
Glu
CTC
[ENA]
¡û
>W1810107617
PHFD01000388
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
1221
1145
-
Glu
CTC
[ENA]
¡û
>W1810266177
PQVQ01000004
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
15528
15452
-
Glu
CTC
[ENA]
¡û
>W1810603281
QGLC01000010
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
10324
10248
-
Glu
CTC
[ENA]
¡û
>W1810603321
QGLD01000010
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
15673
15597
-
Glu
CTC
[ENA]
¡û
>C151015188
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
894442
894366
-
Glu
CTC
[Ensembl]
¡û
>C151015234
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
819540
819464
-
Glu
CTC
[Ensembl]
¡û
>W10109935
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
622377
622301
-
Glu
CTC
[ENA]
¡û
>C10105225
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
823626
823550
-
Glu
CTC
[Ensembl]
¡û
>W11112372
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
622377
622301
-
Glu
CTC
[ENA]
¡û
>C161000346
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
856012
855936
-
Glu
CTC
-
¡û
>C161031517
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
853570
853494
-
Glu
CTC
[Ensembl]
¡û
>C131012556
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
918725
918649
-
Glu
CTC
[Ensembl]
¡û
>W1610521042
JGYD01000025
Chloroflexota
Dehalococcoides mccartyi [JGYD]
187229
187305
+
Glu
CTC
[ENA]
¡û
>W1610541331
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
769818
769742
-
Glu
CTC
[ENA]
¡û
>W1611031977
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
307510
307586
+
Glu
CTC
[ENA]
¡û
>W1611032049
LZFK01000008
Chloroflexota
Dehalococcoides mccartyi [LZFK]
1529
1453
-
Glu
CTC
[ENA]
¡û
>W1710617292
JGYD01000025
Chloroflexota
Dehalococcoides mccartyi [JGYD]
187229
187305
+
Glu
CTC
[ENA]
¡û
>W1710644462
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
769818
769742
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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