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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.779605 (46 seq.)
>W1711272448
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
307423
307496
+
Gln
CTG
[ENA]
¡û
>W1711272520
LZFK01000008
Chloroflexota
Dehalococcoides mccartyi [LZFK]
1615
1542
-
Gln
CTG
[ENA]
¡û
>C171019760
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
983676
983603
-
Gln
CTG
-
¡û
>C171063635
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
881036
880963
-
Gln
CTG
-
¡û
>C171100366
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
850791
850718
-
Gln
CTG
-
¡û
>C171100411
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
794320
794247
-
Gln
CTG
-
¡û
>C171100456
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
933005
932932
-
Gln
CTG
-
¡û
>C171100502
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
898861
898788
-
Gln
CTG
-
¡û
>C171101377
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
888227
888154
-
Gln
CTG
-
¡û
>C171101944
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
796807
796734
-
Gln
CTG
-
¡û
>C171101990
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
782325
782252
-
Gln
CTG
-
¡û
>C171102531
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
833313
833240
-
Gln
CTG
-
¡û
>C007610
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
895295
895222
-
Gln
CTG
[Ensembl]
¡û
>C007657
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
806579
806506
-
Gln
CTG
[Ensembl]
¡û
>C007703
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
930663
930590
-
Gln
CTG
[Ensembl]
¡û
>W08002850
ABFQ01000011
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
35887
35817
-
Gln
CTG
[ENA]
¡û
>WENV170658985
JXWO01000006
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
2480
2407
-
Gln
CTG
[ENA]
¢þ
>C181003149
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
826340
826267
-
Gln
CTG
-
¡û
>C191160392
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
838893
838820
-
Gln
CTG
-
¡û
>W141809024
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
339336
339409
+
Gln
CTG
[ENA]
¡û
>C141007780
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
847123
847050
-
Gln
CTG
[Ensembl]
¡û
>W1810107560
PHFC01000115
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
185
112
-
Gln
CTG
[ENA]
¡û
>W1810107616
PHFD01000388
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
1307
1234
-
Gln
CTG
[ENA]
¡û
>W1810266176
PQVQ01000004
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
15615
15542
-
Gln
CTG
[ENA]
¡û
>W1810603280
QGLC01000010
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
10410
10337
-
Gln
CTG
[ENA]
¡û
>W1810603320
QGLD01000010
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
15759
15686
-
Gln
CTG
[ENA]
¡û
>C151003223
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
830773
830700
-
Gln
CTG
[Ensembl]
¡û
>C151015141
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
861700
861627
-
Gln
CTG
[Ensembl]
¡û
>C151015187
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
894529
894456
-
Gln
CTG
[Ensembl]
¡û
>C151015233
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
819626
819553
-
Gln
CTG
[Ensembl]
¡û
>W10109934
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
622463
622390
-
Gln
CTG
[ENA]
¡û
>C10105224
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
823712
823639
-
Gln
CTG
[Ensembl]
¡û
>C10105270
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
830801
830728
-
Gln
CTG
[Ensembl]
¡û
>W11112371
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
622463
622390
-
Gln
CTG
[ENA]
¡û
>C161000345
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
856098
856025
-
Gln
CTG
-
¡û
>C161031516
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
853656
853583
-
Gln
CTG
[Ensembl]
¡û
>C131012555
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
918811
918738
-
Gln
CTG
[Ensembl]
¡û
>C131012601
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
900823
900750
-
Gln
CTG
[Ensembl]
¡û
>W1610520992
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
111175
111102
-
Gln
CTG
[ENA]
¡û
>W1610521041
JGYD01000025
Chloroflexota
Dehalococcoides mccartyi [JGYD]
142190
142263
+
Gln
CTG
[ENA]
¡û
>W1610541330
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
769904
769831
-
Gln
CTG
[ENA]
¡û
>W1611031976
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
307423
307496
+
Gln
CTG
[ENA]
¡û
>W1611032048
LZFK01000008
Chloroflexota
Dehalococcoides mccartyi [LZFK]
1615
1542
-
Gln
CTG
[ENA]
¡û
>W1710617242
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
111175
111102
-
Gln
CTG
[ENA]
¡û
>W1710617291
JGYD01000025
Chloroflexota
Dehalococcoides mccartyi [JGYD]
142190
142263
+
Gln
CTG
[ENA]
¡û
>W1710644461
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
769904
769831
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK