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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452429 (45 seq.)
>W1711272471
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
522823
522748
-
Phe
GAA
[ENA]
¡û
>C171019743
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
746189
746264
+
Phe
GAA
-
¡û
>C171063614
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
686481
686556
+
Phe
GAA
-
¡û
>C171100345
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
669966
670041
+
Phe
GAA
-
¡û
>C171100390
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
627644
627719
+
Phe
GAA
-
¡û
>C171100435
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
712407
712482
+
Phe
GAA
-
¡û
>C171100481
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
678263
678338
+
Phe
GAA
-
¡û
>C171101356
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
688024
688099
+
Phe
GAA
-
¡û
>C171101923
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
609631
609706
+
Phe
GAA
-
¡û
>C171101969
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
594474
594549
+
Phe
GAA
-
¡û
>C171102510
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
645462
645537
+
Phe
GAA
-
¡û
>C007589
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
719505
719580
+
Phe
GAA
[Ensembl]
¡û
>C007636
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
640404
640479
+
Phe
GAA
[Ensembl]
¡û
>C007682
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
740686
740761
+
Phe
GAA
[Ensembl]
¡û
>W08002835
ABFQ01000001
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
126824
126752
-
Phe
GAA
[ENA]
¡û
>WENV170659004
JXWO01000028
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
39681
39756
+
Phe
GAA
[ENA]
¢þ
>C181003128
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
651971
652046
+
Phe
GAA
-
¡û
>C191160371
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
665781
665856
+
Phe
GAA
-
¡û
>W09105062
AAOM01000024
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
5279
5354
+
Phe
GAA
[ENA]
¡û
>W141809053
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
505509
505434
-
Phe
GAA
[ENA]
¡û
>C141007759
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
672720
672795
+
Phe
GAA
[Ensembl]
¡û
>W1810107545
PHFC01000047
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
779
704
-
Phe
GAA
[ENA]
¡û
>W1810107589
PHFD01000098
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
5254
5329
+
Phe
GAA
[ENA]
¡û
>W1810266190
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
403959
404034
+
Phe
GAA
[ENA]
¡û
>W1810603262
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
464338
464413
+
Phe
GAA
[ENA]
¡û
>W1810603304
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
550928
551003
+
Phe
GAA
[ENA]
¡û
>C151003202
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
652938
653013
+
Phe
GAA
[Ensembl]
¡û
>C151015119
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
692112
692187
+
Phe
GAA
[Ensembl]
¡û
>C151015166
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
662318
662393
+
Phe
GAA
[Ensembl]
¡û
>C151015212
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
610825
610900
+
Phe
GAA
[Ensembl]
¡û
>W10109928
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456283
456358
+
Phe
GAA
[ENA]
¡û
>C10105203
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
657532
657607
+
Phe
GAA
[Ensembl]
¡û
>C10105249
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
664688
664763
+
Phe
GAA
[Ensembl]
¡û
>W11112365
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456283
456358
+
Phe
GAA
[ENA]
¡û
>C161000324
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
689941
690016
+
Phe
GAA
-
¡û
>C161031495
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
651249
651324
+
Phe
GAA
[Ensembl]
¡û
>C131012534
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
752628
752703
+
Phe
GAA
[Ensembl]
¡û
>C131012580
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
687169
687244
+
Phe
GAA
[Ensembl]
¡û
>W1610521008
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
563056
563131
+
Phe
GAA
[ENA]
¡û
>W1610521051
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
67765
67690
-
Phe
GAA
[ENA]
¡û
>W1610541313
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
603721
603796
+
Phe
GAA
[ENA]
¡û
>W1611031999
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
522823
522748
-
Phe
GAA
[ENA]
¡û
>W1710617258
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
563056
563131
+
Phe
GAA
[ENA]
¡û
>W1710617301
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
67765
67690
-
Phe
GAA
[ENA]
¡û
>W1710644444
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
603721
603796
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK