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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271470 (29 seq.)
>W1711272531
LZFK01000016
Chloroflexota
Dehalococcoides mccartyi [LZFK]
95489
95413
-
Val
GAC
[ENA]
¡û
>C171063634
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
964248
964172
-
Val
GAC
-
¡û
>C171100455
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1057849
1057773
-
Val
GAC
-
¡û
>C171100501
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1023705
1023629
-
Val
GAC
-
¡û
>C171101376
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
972378
972302
-
Val
GAC
-
¡û
>C171101943
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
880907
880831
-
Val
GAC
-
¡û
>C171101989
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
898751
898675
-
Val
GAC
-
¡û
>C171102530
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
949784
949708
-
Val
GAC
-
¡û
>C007609
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
985210
985134
-
Val
GAC
[Ensembl]
¡û
>C007656
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
889786
889710
-
Val
GAC
[Ensembl]
¡û
>WENV170659011
JXWO01000033
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
54131
54207
+
Val
GAC
[ENA]
¢þ
>W09105045
AAOM01000004
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
40559
40635
+
Val
GAC
[ENA]
¡û
>C191160391
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
970413
970337
-
Val
GAC
-
¡û
>W141809023
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
256124
256200
+
Val
GAC
[ENA]
¡û
>W1810603292
QGLC01000021
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
2893
2969
+
Val
GAC
[ENA]
¡û
>W1810603332
QGLD01000011
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
351
275
-
Val
GAC
[ENA]
¡û
>C151015232
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
902851
902775
-
Val
GAC
[Ensembl]
¡û
>W10109961
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
484
408
-
Val
GAC
[ENA]
¡û
>C10105223
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
886268
886192
-
Val
GAC
[Ensembl]
¡û
>W11112398
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
484
408
-
Val
GAC
[ENA]
¡û
>C161000344
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
939306
939230
-
Val
GAC
-
¡û
>C161031515
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
936868
936792
-
Val
GAC
[Ensembl]
¡û
>C131012554
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1002076
1002000
-
Val
GAC
[Ensembl]
¡û
>C131012600
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
984924
984848
-
Val
GAC
[Ensembl]
¡û
>W1610520991
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
195258
195182
-
Val
GAC
[ENA]
¡û
>W1610541329
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
886802
886726
-
Val
GAC
[ENA]
¡û
>W1611032059
LZFK01000016
Chloroflexota
Dehalococcoides mccartyi [LZFK]
95489
95413
-
Val
GAC
[ENA]
¡û
>W1710617241
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
195258
195182
-
Val
GAC
[ENA]
¡û
>W1710644460
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
886802
886726
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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