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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653836 (48 seq.)
>W1711272480
LZFJ01000007
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
39712
39786
+
Gly
GCC
[ENA]
¡û
>C171019752
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
1333321
1333395
+
Gly
GCC
-
¡û
>C171063623
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1203840
1203914
+
Gly
GCC
-
¡û
>C171100354
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
1213247
1213321
+
Gly
GCC
-
¡û
>C171100399
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
1155654
1155728
+
Gly
GCC
-
¡û
>C171100444
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1288324
1288398
+
Gly
GCC
-
¡û
>C171100490
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1254180
1254254
+
Gly
GCC
-
¡û
>C171101365
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1202616
1202690
+
Gly
GCC
-
¡û
>C171101932
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1111438
1111512
+
Gly
GCC
-
¡û
>C171101978
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1129139
1129213
+
Gly
GCC
-
¡û
>C171102519
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1180329
1180403
+
Gly
GCC
-
¡û
>C007598
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1226307
1226381
+
Gly
GCC
[Ensembl]
¡û
>C007645
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1120174
1120248
+
Gly
GCC
[Ensembl]
¡û
>C007691
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
1308437
1308511
+
Gly
GCC
[Ensembl]
¡û
>WENV180346556
OBLN01151890
[OBLN] sediment metagenome; sediment
253
179
-
Gly
GCC
[ENA]
¢þ
>W08002863
ABFQ01000016
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
2227
2156
-
Gly
GCC
[ENA]
¡û
>WENV183675154
ORJL011478955
[ORJL] groundwater metagenome; groundwater
102
28
-
Gly
GCC
[ENA]
¢þ
>WENV183675929
ORJL011568417
[ORJL] groundwater metagenome; groundwater
4706
4780
+
Gly
GCC
[ENA]
¢þ
>WENV170658991
JXWO01000020
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
31638
31712
+
Gly
GCC
[ENA]
¢þ
>C181003137
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
1172081
1172155
+
Gly
GCC
-
¡û
>C191160380
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1200822
1200896
+
Gly
GCC
-
¡û
>W09105028
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
31616
31690
+
Gly
GCC
[ENA]
¡û
>W141809062
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
25578
25504
-
Gly
GCC
[ENA]
¡û
>C141007768
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
1182021
1182095
+
Gly
GCC
[Ensembl]
¡û
>W1810107557
PHFC01000066
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1375
1301
-
Gly
GCC
[ENA]
¡û
>W1810107595
PHFD01000104
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
4865
4791
-
Gly
GCC
[ENA]
¡û
>W1810266168
PQVQ01000004
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
337354
337428
+
Gly
GCC
[ENA]
¡û
>W1810603287
QGLC01000012
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
28952
29026
+
Gly
GCC
[ENA]
¡û
>W1810603326
QGLD01000011
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
242260
242334
+
Gly
GCC
[ENA]
¡û
>C151003211
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
1164332
1164406
+
Gly
GCC
[Ensembl]
¡û
>C151015129
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
1222774
1222848
+
Gly
GCC
[Ensembl]
¡û
>C151015175
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
1225593
1225667
+
Gly
GCC
[Ensembl]
¡û
>C151015221
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1133338
1133412
+
Gly
GCC
[Ensembl]
¡û
>W10109954
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
211988
212062
+
Gly
GCC
[ENA]
¡û
>C10105212
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1097772
1097846
+
Gly
GCC
[Ensembl]
¡û
>C10105258
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
1132524
1132598
+
Gly
GCC
[Ensembl]
¡û
>W11112391
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
211988
212062
+
Gly
GCC
[ENA]
¡û
>C161000333
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1187275
1187349
+
Gly
GCC
-
¡û
>C161031504
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1167414
1167488
+
Gly
GCC
[Ensembl]
¡û
>C131012543
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1232515
1232589
+
Gly
GCC
[Ensembl]
¡û
>C131012589
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1216458
1216532
+
Gly
GCC
[Ensembl]
¡û
>W1610520984
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
437605
437679
+
Gly
GCC
[ENA]
¡û
>W1610521034
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
33761
33687
-
Gly
GCC
[ENA]
¡û
>W1610541322
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1117006
1117080
+
Gly
GCC
[ENA]
¡û
>W1611032008
LZFJ01000007
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
39712
39786
+
Gly
GCC
[ENA]
¡û
>W1710617234
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
437605
437679
+
Gly
GCC
[ENA]
¡û
>W1710617284
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
33761
33687
-
Gly
GCC
[ENA]
¡û
>W1710644453
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1117006
1117080
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK