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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240652 (35 seq.)
>W1711272499
LZFK01000004
Chloroflexota
Dehalococcoides mccartyi [LZFK]
24732
24655
-
Arg
GCG
[ENA]
¡û
>C171019756
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
1350072
1350149
+
Arg
GCG
-
¡û
>C171063627
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1220919
1220996
+
Arg
GCG
-
¡û
>C171100448
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1305408
1305485
+
Arg
GCG
-
¡û
>C171100494
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1271264
1271341
+
Arg
GCG
-
¡û
>C171101369
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1219698
1219775
+
Arg
GCG
-
¡û
>C171101936
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1128522
1128599
+
Arg
GCG
-
¡û
>C171101982
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1146223
1146300
+
Arg
GCG
-
¡û
>C171102523
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1197413
1197490
+
Arg
GCG
-
¡û
>C007602
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1243391
1243468
+
Arg
GCG
[Ensembl]
¡û
>C007649
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1137254
1137331
+
Arg
GCG
[Ensembl]
¡û
>C007695
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
1325295
1325372
+
Arg
GCG
[Ensembl]
¡û
>W08002858
ABFQ01000014
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
14333
14410
+
Arg
GCG
[ENA]
¡û
>WENV170658995
JXWO01000020
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
48827
48904
+
Arg
GCG
[ENA]
¢þ
>C191160384
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1217901
1217978
+
Arg
GCG
-
¡û
>W09105032
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
48700
48777
+
Arg
GCG
[ENA]
¡û
>W141809066
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
8499
8422
-
Arg
GCG
[ENA]
¡û
>C141007772
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
1198772
1198849
+
Arg
GCG
[Ensembl]
¡û
>W1810107572
PHFC01000183
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1402
1479
+
Arg
GCG
[ENA]
¡û
>C151003215
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
1181085
1181162
+
Arg
GCG
[Ensembl]
¡û
>C151015133
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
1239525
1239602
+
Arg
GCG
[Ensembl]
¡û
>C151015225
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1150417
1150494
+
Arg
GCG
[Ensembl]
¡û
>W10109958
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
229069
229146
+
Arg
GCG
[ENA]
¡û
>C10105216
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1114853
1114930
+
Arg
GCG
[Ensembl]
¡û
>C10105262
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
1149275
1149352
+
Arg
GCG
[Ensembl]
¡û
>W11112395
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
229069
229146
+
Arg
GCG
[ENA]
¡û
>C161000337
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1204356
1204433
+
Arg
GCG
-
¡û
>C161031508
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1184493
1184570
+
Arg
GCG
[Ensembl]
¡û
>C131012547
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1249597
1249674
+
Arg
GCG
[Ensembl]
¡û
>C131012593
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1233538
1233615
+
Arg
GCG
[Ensembl]
¡û
>W1610520988
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
454685
454762
+
Arg
GCG
[ENA]
¡û
>W1610541326
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1134088
1134165
+
Arg
GCG
[ENA]
¡û
>W1611032027
LZFK01000004
Chloroflexota
Dehalococcoides mccartyi [LZFK]
24732
24655
-
Arg
GCG
[ENA]
¡û
>W1710617238
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
454685
454762
+
Arg
GCG
[ENA]
¡û
>W1710644457
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1134088
1134165
+
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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