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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.19885 (35 seq.)
>W1711272530
LZFK01000016
Chloroflexota
Dehalococcoides mccartyi [LZFK]
285543
285452
-
Ser
GCT
[ENA]
¡û
>C171019758
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
1279228
1279137
-
Ser
GCT
-
¡û
>C171063633
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1149509
1149418
-
Ser
GCT
-
¡û
>C171100454
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1234010
1233919
-
Ser
GCT
-
¡û
>C171100500
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1199866
1199775
-
Ser
GCT
-
¡û
>C171101375
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1148367
1148276
-
Ser
GCT
-
¡û
>C171101942
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1057161
1057070
-
Ser
GCT
-
¡û
>C171101988
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1074874
1074783
-
Ser
GCT
-
¡û
>C171102529
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1126034
1125943
-
Ser
GCT
-
¡û
>C007608
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1172021
1171930
-
Ser
GCT
[Ensembl]
¡û
>C007655
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1065926
1065835
-
Ser
GCT
[Ensembl]
¡û
>W08002867
ABFQ01000022
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
2362
2274
-
Ser
GCT
[ENA]
¡û
>W09105055
AAOM01000012
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
15798
15889
+
Ser
GCT
[ENA]
¡û
>C191160390
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1146609
1146518
-
Ser
GCT
-
¡û
>W141809022
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
79851
79942
+
Ser
GCT
[ENA]
¡û
>C141007778
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
1127953
1127862
-
Ser
GCT
[Ensembl]
¡û
>W1810107577
PHFC01000202
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1954
2045
+
Ser
GCT
[ENA]
¡û
>W1810107586
PHFC01000353
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
578
669
+
Ser
GCT
[ENA]
¡û
>W1810107610
PHFD01000179
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
1217
1126
-
Ser
GCT
[ENA]
¡û
>W1810603284
QGLC01000011
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
184848
184757
-
Ser
GCT
[ENA]
¡û
>W1810603331
QGLD01000011
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
188054
187963
-
Ser
GCT
[ENA]
¡û
>C151003221
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
1110217
1110126
-
Ser
GCT
[Ensembl]
¡û
>C151015139
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
1168663
1168572
-
Ser
GCT
[Ensembl]
¡û
>C151015231
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1079087
1078996
-
Ser
GCT
[Ensembl]
¡û
>W10109960
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
157743
157652
-
Ser
GCT
[ENA]
¡û
>C10105222
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1043527
1043436
-
Ser
GCT
[Ensembl]
¡û
>C10105268
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
1078426
1078335
-
Ser
GCT
[Ensembl]
¡û
>W11112397
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
157743
157652
-
Ser
GCT
[ENA]
¡û
>C161000343
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1133063
1132972
-
Ser
GCT
-
¡û
>C161031514
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1113141
1113050
-
Ser
GCT
[Ensembl]
¡û
>C131012553
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1178224
1178133
-
Ser
GCT
[Ensembl]
¡û
>C131012599
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1162135
1162044
-
Ser
GCT
[Ensembl]
¡û
>W1610541328
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1062680
1062589
-
Ser
GCT
[ENA]
¡û
>W1611032058
LZFK01000016
Chloroflexota
Dehalococcoides mccartyi [LZFK]
285543
285452
-
Ser
GCT
[ENA]
¡û
>W1710644459
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1062680
1062589
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK