This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45755 (47 seq.)
>W1711272461
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
646490
646579
+
Ser
GGA
[ENA]
¡û
>W1711272511
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
499912
499823
-
Ser
GGA
[ENA]
¡û
>C171019773
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
671680
671591
-
Ser
GGA
-
¡û
>C171063648
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
611395
611306
-
Ser
GGA
-
¡û
>C171100378
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
595624
595535
-
Ser
GGA
-
¡û
>C171100423
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
553302
553213
-
Ser
GGA
-
¡û
>C171100469
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
637298
637209
-
Ser
GGA
-
¡û
>C171100515
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
603154
603065
-
Ser
GGA
-
¡û
>C171101390
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
612919
612830
-
Ser
GGA
-
¡û
>C171101957
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
534527
534438
-
Ser
GGA
-
¡û
>C171102003
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
519368
519279
-
Ser
GGA
-
¡û
>C171102544
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
570384
570295
-
Ser
GGA
-
¡û
>C007623
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
644413
644324
-
Ser
GGA
[Ensembl]
¡û
>C007670
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
557122
557033
-
Ser
GGA
[Ensembl]
¡û
>C007716
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
666401
666312
-
Ser
GGA
[Ensembl]
¡û
>W08002872
ABFQ01000023
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
11363
11277
-
Ser
GGA
[ENA]
¡û
>WENV170659021
JXWO01000037
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
15806
15717
-
Ser
GGA
[ENA]
¢þ
>C181003162
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
537016
536927
-
Ser
GGA
-
¡û
>W09105053
AAOM01000010
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
26172
26083
-
Ser
GGA
[ENA]
¡û
>C191160405
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
590698
590609
-
Ser
GGA
-
¡û
>W141809037
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
580596
580685
+
Ser
GGA
[ENA]
¡û
>C141007793
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
561412
561323
-
Ser
GGA
[Ensembl]
¡û
>W1810107583
PHFC01000264
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
693
782
+
Ser
GGA
[ENA]
¡û
>W1810107625
PHFD01000435
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
521
610
+
Ser
GGA
[ENA]
¡û
>W1810266205
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
329611
329522
-
Ser
GGA
[ENA]
¡û
>W1810603276
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
389273
389184
-
Ser
GGA
[ENA]
¡û
>W1810603312
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
475878
475789
-
Ser
GGA
[ENA]
¡û
>C151003236
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
578438
578349
-
Ser
GGA
[Ensembl]
¡û
>C151015154
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
617603
617514
-
Ser
GGA
[Ensembl]
¡û
>C151015200
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
586034
585945
-
Ser
GGA
[Ensembl]
¡û
>C151015246
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
535737
535648
-
Ser
GGA
[Ensembl]
¡û
>W10109947
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
381179
381090
-
Ser
GGA
[ENA]
¡û
>C10105237
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
582427
582338
-
Ser
GGA
[Ensembl]
¡û
>C10105283
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
590171
590082
-
Ser
GGA
[Ensembl]
¡û
>W11112384
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
381179
381090
-
Ser
GGA
[ENA]
¡û
>C161000358
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
614833
614744
-
Ser
GGA
-
¡û
>C161031529
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
576162
576073
-
Ser
GGA
[Ensembl]
¡û
>C131012568
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
677523
677434
-
Ser
GGA
[Ensembl]
¡û
>C131012614
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
612066
611977
-
Ser
GGA
[Ensembl]
¡û
>W1610521017
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
488384
488295
-
Ser
GGA
[ENA]
¡û
>W1610521022
JGYD01000010
Chloroflexota
Dehalococcoides mccartyi [JGYD]
10268
10357
+
Ser
GGA
[ENA]
¡û
>W1610541343
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
528613
528524
-
Ser
GGA
[ENA]
¡û
>W1611031989
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
646490
646579
+
Ser
GGA
[ENA]
¡û
>W1611032039
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
499912
499823
-
Ser
GGA
[ENA]
¡û
>W1710617267
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
488384
488295
-
Ser
GGA
[ENA]
¡û
>W1710617272
JGYD01000010
Chloroflexota
Dehalococcoides mccartyi [JGYD]
10268
10357
+
Ser
GGA
[ENA]
¡û
>W1710644474
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
528613
528524
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK