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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452427 (47 seq.)
>W1711272491
LZFJ01000008
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
123078
123003
-
Ala
GGC
[ENA]
¡û
>W1711272522
LZFK01000013
Chloroflexota
Dehalococcoides mccartyi [LZFK]
7190
7265
+
Ala
GGC
[ENA]
¡û
>W1711408867
MGNK01000085
Chloroflexota
Chloroflexi bacterium RBG_16_50_9 [MGNK]
276
201
-
Ala
GGC
[ENA]
¡û
>C171019735
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
170380
170455
+
Ala
GGC
-
¡û
>C171063606
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
58102
58177
+
Ala
GGC
-
¡û
>C171100337
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
57785
57860
+
Ala
GGC
-
¡û
>C171100382
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
57785
57860
+
Ala
GGC
-
¡û
>C171100427
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
58144
58219
+
Ala
GGC
-
¡û
>C171100473
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
58144
58219
+
Ala
GGC
-
¡û
>C171101348
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
58144
58219
+
Ala
GGC
-
¡û
>C171101915
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
57579
57654
+
Ala
GGC
-
¡û
>C171101961
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
57575
57650
+
Ala
GGC
-
¡û
>C007582
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
57444
57519
+
Ala
GGC
[Ensembl]
¡û
>C007628
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
58025
58100
+
Ala
GGC
[Ensembl]
¡û
>C007674
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
57782
57857
+
Ala
GGC
[Ensembl]
¡û
>W08002848
ABFQ01000009
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
20291
20366
+
Ala
GGC
[ENA]
¡û
>WENV170659002
JXWO01000025
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
87
12
-
Ala
GGC
[ENA]
¢þ
>C181003120
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
57787
57862
+
Ala
GGC
-
¡û
>C191160363
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
58362
58437
+
Ala
GGC
-
¡û
>W09105036
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
213184
213259
+
Ala
GGC
[ENA]
¡û
>W141809045
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
1103857
1103782
-
Ala
GGC
[ENA]
¡û
>C141007751
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
57438
57513
+
Ala
GGC
[Ensembl]
¡û
>W1810107580
PHFC01000240
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
2313
2388
+
Ala
GGC
[ENA]
¡û
>W1810107615
PHFD01000382
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
949
1024
+
Ala
GGC
[ENA]
¡û
>W1810266182
PQVQ01000014
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
39594
39519
-
Ala
GGC
[ENA]
¡û
>W1810603293
QGLC01000025
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
26692
26767
+
Ala
GGC
[ENA]
¡û
>W1810603333
QGLD01000018
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
14033
14108
+
Ala
GGC
[ENA]
¡û
>C151003194
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
57429
57504
+
Ala
GGC
[Ensembl]
¡û
>C151015111
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
58288
58363
+
Ala
GGC
[Ensembl]
¡û
>C151015158
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
57783
57858
+
Ala
GGC
[Ensembl]
¡û
>C151015204
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
58363
58438
+
Ala
GGC
[Ensembl]
¡û
>W10109965
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
183184
183259
+
Ala
GGC
[ENA]
¡û
>C10105195
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
57563
57638
+
Ala
GGC
[Ensembl]
¡û
>C10105241
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
57449
57524
+
Ala
GGC
[Ensembl]
¡û
>W11112402
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
183184
183259
+
Ala
GGC
[ENA]
¡û
>C161000316
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
58146
58221
+
Ala
GGC
-
¡û
>C161031487
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
58510
58585
+
Ala
GGC
[Ensembl]
¡û
>C131012526
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
58138
58213
+
Ala
GGC
[Ensembl]
¡û
>C131012572
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
58054
58129
+
Ala
GGC
[Ensembl]
¡û
>W1610520979
JGVX01000001
Chloroflexota
Dehalococcoides mccartyi [JGVX]
568
493
-
Ala
GGC
[ENA]
¡û
>W1610521059
JGYD01000027
Chloroflexota
Dehalococcoides mccartyi [JGYD]
133938
134013
+
Ala
GGC
[ENA]
¡û
>W1610541304
JSWM01000006
Chloroflexota
Dehalococcoides mccartyi [JSWM]
135313
135388
+
Ala
GGC
[ENA]
¡û
>W1611032019
LZFJ01000008
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
123078
123003
-
Ala
GGC
[ENA]
¡û
>W1611032050
LZFK01000013
Chloroflexota
Dehalococcoides mccartyi [LZFK]
7190
7265
+
Ala
GGC
[ENA]
¡û
>W1710617229
JGVX01000001
Chloroflexota
Dehalococcoides mccartyi [JGVX]
568
493
-
Ala
GGC
[ENA]
¡û
>W1710617309
JGYD01000027
Chloroflexota
Dehalococcoides mccartyi [JGYD]
133938
134013
+
Ala
GGC
[ENA]
¡û
>W1710644435
JSWM01000006
Chloroflexota
Dehalococcoides mccartyi [JSWM]
135313
135388
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK