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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452421 (46 seq.)
>W1711272453
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
328738
328813
+
Thr
GGT
[ENA]
¡û
>C171019765
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
935450
935375
-
Thr
GGT
-
¡û
>C171063640
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
835080
835005
-
Thr
GGT
-
¡û
>C171100370
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
812950
812875
-
Thr
GGT
-
¡û
>C171100415
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
770628
770553
-
Thr
GGT
-
¡û
>C171100461
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
890827
890752
-
Thr
GGT
-
¡û
>C171100507
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
856683
856608
-
Thr
GGT
-
¡û
>C171101382
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
865455
865380
-
Thr
GGT
-
¡û
>C171101949
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
754574
754499
-
Thr
GGT
-
¡û
>C171101995
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
761090
761015
-
Thr
GGT
-
¡û
>C171102536
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
812078
812003
-
Thr
GGT
-
¡û
>C007615
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
874961
874886
-
Thr
GGT
[Ensembl]
¡û
>C007662
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
785345
785270
-
Thr
GGT
[Ensembl]
¡û
>C007708
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
913416
913341
-
Thr
GGT
[Ensembl]
¡û
>W08002855
ABFQ01000011
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
13265
13193
-
Thr
GGT
[ENA]
¡û
>WENV183703151
PDVJ01003936
[PDVJ] alkali sediment metagenome; glacial lake sediment
970
1042
+
Thr
GGT
[ENA]
¢þ
>WENV170004151
AGTN01578253
[AGTN] bioreactor metagenome; poplar biomass
372
300
-
Thr
GGT
[ENA]
¢þ
>WENV170658999
JXWO01000024
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
32100
32025
-
Thr
GGT
[ENA]
¢þ
>C181003154
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
796421
796346
-
Thr
GGT
-
¡û
>C191160397
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
817662
817587
-
Thr
GGT
-
¡û
>W141809029
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
360567
360642
+
Thr
GGT
[ENA]
¡û
>C141007785
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
819700
819625
-
Thr
GGT
[Ensembl]
¡û
>W1810107567
PHFC01000137
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
361
286
-
Thr
GGT
[ENA]
¡û
>W1810107602
PHFD01000107
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
2443
2368
-
Thr
GGT
[ENA]
¡û
>W1810266197
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
546961
546886
-
Thr
GGT
[ENA]
¡û
>W1810603268
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
609194
609119
-
Thr
GGT
[ENA]
¡û
>W1810603317
QGLD01000009
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
48193
48118
-
Thr
GGT
[ENA]
¡û
>C151003228
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
803339
803264
-
Thr
GGT
[Ensembl]
¡û
>C151015146
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
839084
839009
-
Thr
GGT
[Ensembl]
¡û
>C151015192
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
877299
877224
-
Thr
GGT
[Ensembl]
¡û
>C151015238
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
798393
798318
-
Thr
GGT
[Ensembl]
¡û
>W10109939
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
601226
601151
-
Thr
GGT
[ENA]
¡û
>C10105229
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
802475
802400
-
Thr
GGT
[Ensembl]
¡û
>C10105275
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
808179
808104
-
Thr
GGT
[Ensembl]
¡û
>W11112376
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
601226
601151
-
Thr
GGT
[ENA]
¡û
>C161000350
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
834863
834788
-
Thr
GGT
-
¡û
>C161031521
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
832425
832350
-
Thr
GGT
[Ensembl]
¡û
>C131012560
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
897573
897498
-
Thr
GGT
[Ensembl]
¡û
>C131012606
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
876347
876272
-
Thr
GGT
[Ensembl]
¡û
>W1610520997
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
86697
86622
-
Thr
GGT
[ENA]
¡û
>W1610521063
JGYD01000029
Chloroflexota
Dehalococcoides mccartyi [JGYD]
18904
18979
+
Thr
GGT
[ENA]
¡û
>W1610541335
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
748666
748591
-
Thr
GGT
[ENA]
¡û
>W1611031981
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
328738
328813
+
Thr
GGT
[ENA]
¡û
>W1710617247
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
86697
86622
-
Thr
GGT
[ENA]
¡û
>W1710617313
JGYD01000029
Chloroflexota
Dehalococcoides mccartyi [JGYD]
18904
18979
+
Thr
GGT
[ENA]
¡û
>W1710644466
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
748666
748591
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK