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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112375 (43 seq.)
>W1711272452
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
328591
328676
+
Tyr
GTA
[ENA]
¡û
>C171019764
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
935597
935512
-
Tyr
GTA
-
¡û
>C171063639
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
835227
835142
-
Tyr
GTA
-
¡û
>C171100369
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
813097
813012
-
Tyr
GTA
-
¡û
>C171100414
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
770775
770690
-
Tyr
GTA
-
¡û
>C171100460
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
890974
890889
-
Tyr
GTA
-
¡û
>C171100506
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
856830
856745
-
Tyr
GTA
-
¡û
>C171101381
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
865602
865517
-
Tyr
GTA
-
¡û
>C171101948
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
754721
754636
-
Tyr
GTA
-
¡û
>C171101994
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
761237
761152
-
Tyr
GTA
-
¡û
>C171102535
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
812225
812140
-
Tyr
GTA
-
¡û
>C007614
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
875107
875024
-
Tyr
GTA
[Ensembl]
¡û
>C007661
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
785491
785408
-
Tyr
GTA
[Ensembl]
¡û
>C007707
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
913562
913479
-
Tyr
GTA
[Ensembl]
¡û
>W08002854
ABFQ01000011
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
13412
13327
-
Tyr
GTA
[ENA]
¡û
>WENV170658998
JXWO01000024
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
32247
32162
-
Tyr
GTA
[ENA]
¢þ
>C181003153
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
796568
796483
-
Tyr
GTA
-
¡û
>C191160396
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
817809
817724
-
Tyr
GTA
-
¡û
>W141809028
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
360420
360505
+
Tyr
GTA
[ENA]
¡û
>C141007784
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
819847
819762
-
Tyr
GTA
[Ensembl]
¡û
>W1810107566
PHFC01000137
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
508
423
-
Tyr
GTA
[ENA]
¡û
>W1810107601
PHFD01000107
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
2590
2505
-
Tyr
GTA
[ENA]
¡û
>W1810603267
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
609339
609254
-
Tyr
GTA
[ENA]
¡û
>W1810603316
QGLD01000009
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
48340
48255
-
Tyr
GTA
[ENA]
¡û
>C151003227
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
803486
803401
-
Tyr
GTA
[Ensembl]
¡û
>C151015145
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
839231
839146
-
Tyr
GTA
[Ensembl]
¡û
>C151015191
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
877446
877361
-
Tyr
GTA
[Ensembl]
¡û
>C151015237
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
798540
798455
-
Tyr
GTA
[Ensembl]
¡û
>W10109938
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
601373
601288
-
Tyr
GTA
[ENA]
¡û
>C10105228
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
802622
802537
-
Tyr
GTA
[Ensembl]
¡û
>C10105274
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
808326
808241
-
Tyr
GTA
[Ensembl]
¡û
>W11112375
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
601373
601288
-
Tyr
GTA
[ENA]
¡û
>C161000349
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
835010
834925
-
Tyr
GTA
-
¡û
>C161031520
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
832572
832487
-
Tyr
GTA
[Ensembl]
¡û
>C131012559
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
897720
897635
-
Tyr
GTA
[Ensembl]
¡û
>C131012605
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
876494
876409
-
Tyr
GTA
[Ensembl]
¡û
>W1610520996
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
86844
86759
-
Tyr
GTA
[ENA]
¡û
>W1610521062
JGYD01000029
Chloroflexota
Dehalococcoides mccartyi [JGYD]
18757
18842
+
Tyr
GTA
[ENA]
¡û
>W1610541334
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
748813
748728
-
Tyr
GTA
[ENA]
¡û
>W1611031980
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
328591
328676
+
Tyr
GTA
[ENA]
¡û
>W1710617246
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
86844
86759
-
Tyr
GTA
[ENA]
¡û
>W1710617312
JGYD01000029
Chloroflexota
Dehalococcoides mccartyi [JGYD]
18757
18842
+
Tyr
GTA
[ENA]
¡û
>W1710644465
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
748813
748728
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK