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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452422 (45 seq.)
>W1711272454
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
364344
364419
+
His
GTG
[ENA]
¡û
>W1711272494
LZFK01000003
Chloroflexota
Dehalococcoides mccartyi [LZFK]
12032
11957
-
His
GTG
[ENA]
¡û
>C171019766
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
899808
899733
-
His
GTG
-
¡û
>C171063641
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
799372
799297
-
His
GTG
-
¡û
>C171100371
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
777346
777271
-
His
GTG
-
¡û
>C171100416
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
735024
734949
-
His
GTG
-
¡û
>C171100462
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
855106
855031
-
His
GTG
-
¡û
>C171100508
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
820962
820887
-
His
GTG
-
¡û
>C171101383
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
829733
829658
-
His
GTG
-
¡û
>C171101950
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
718851
718776
-
His
GTG
-
¡û
>C171101996
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
725367
725292
-
His
GTG
-
¡û
>C171102537
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
776355
776280
-
His
GTG
-
¡û
>C007616
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
839239
839164
-
His
GTG
[Ensembl]
¡û
>C007663
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
749623
749548
-
His
GTG
[Ensembl]
¡û
>C007709
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
877809
877734
-
His
GTG
[Ensembl]
¡û
>W08002831
ABFQ01000001
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
18963
19038
+
His
GTG
[ENA]
¡û
>C181003155
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
760815
760740
-
His
GTG
-
¡û
>C191160398
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
781939
781864
-
His
GTG
-
¡û
>W09105040
AAOM01000002
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
115070
114995
-
His
GTG
[ENA]
¡û
>W141809030
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
396290
396365
+
His
GTG
[ENA]
¡û
>C141007786
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
784057
783982
-
His
GTG
[Ensembl]
¡û
>W1810107569
PHFC01000167
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
2725
2650
-
His
GTG
[ENA]
¡û
>W1810266198
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
511355
511280
-
His
GTG
[ENA]
¡û
>W1810603269
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
573496
573421
-
His
GTG
[ENA]
¡û
>W1810603318
QGLD01000009
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
12491
12416
-
His
GTG
[ENA]
¡û
>C151003229
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
767696
767621
-
His
GTG
[Ensembl]
¡û
>C151015147
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
803442
803367
-
His
GTG
[Ensembl]
¡û
>C151015193
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
841693
841618
-
His
GTG
[Ensembl]
¡û
>C151015239
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
762668
762593
-
His
GTG
[Ensembl]
¡û
>W10109940
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
565503
565428
-
His
GTG
[ENA]
¡û
>C10105230
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
766752
766677
-
His
GTG
[Ensembl]
¡û
>C10105276
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
772549
772474
-
His
GTG
[Ensembl]
¡û
>W11112377
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
565503
565428
-
His
GTG
[ENA]
¡û
>C161000351
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
799140
799065
-
His
GTG
-
¡û
>C161031522
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
796702
796627
-
His
GTG
[Ensembl]
¡û
>C131012561
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
861850
861775
-
His
GTG
[Ensembl]
¡û
>C131012607
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
840625
840550
-
His
GTG
[Ensembl]
¡û
>W1610520998
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
50975
50900
-
His
GTG
[ENA]
¡û
>W1610521064
JGYD01000029
Chloroflexota
Dehalococcoides mccartyi [JGYD]
54511
54586
+
His
GTG
[ENA]
¡û
>W1610541336
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
712943
712868
-
His
GTG
[ENA]
¡û
>W1611031982
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
364344
364419
+
His
GTG
[ENA]
¡û
>W1611032022
LZFK01000003
Chloroflexota
Dehalococcoides mccartyi [LZFK]
12032
11957
-
His
GTG
[ENA]
¡û
>W1710617248
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
50975
50900
-
His
GTG
[ENA]
¡û
>W1710617314
JGYD01000029
Chloroflexota
Dehalococcoides mccartyi [JGYD]
54511
54586
+
His
GTG
[ENA]
¡û
>W1710644467
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
712943
712868
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK