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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653841 (39 seq.)
>W1711272523
LZFK01000014
Chloroflexota
Dehalococcoides mccartyi [LZFK]
21
95
+
Asn
GTT
[ENA]
¡û
>W1711408435
MGMP01000158
Chloroflexota
Chloroflexi bacterium RBG_13_50_10 [MGMP]
7007
7081
+
Asn
GTT
[ENA]
¡û
>C171019746
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
746540
746614
+
Asn
GTT
-
¡û
>C171063617
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
686832
686906
+
Asn
GTT
-
¡û
>C171100438
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
712758
712832
+
Asn
GTT
-
¡û
>C171100484
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
678614
678688
+
Asn
GTT
-
¡û
>C171101359
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
688375
688449
+
Asn
GTT
-
¡û
>C171101926
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
609982
610056
+
Asn
GTT
-
¡û
>C171101972
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
594825
594899
+
Asn
GTT
-
¡û
>C171102513
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
645813
645887
+
Asn
GTT
-
¡û
>C007592
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
719856
719930
+
Asn
GTT
[Ensembl]
¡û
>C007639
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
640755
640829
+
Asn
GTT
[Ensembl]
¡û
>W08002838
ABFQ01000001
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
126473
126402
-
Asn
GTT
[ENA]
¡û
>WENV170659007
JXWO01000028
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
40032
40106
+
Asn
GTT
[ENA]
¢þ
>C191160374
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
666132
666206
+
Asn
GTT
-
¡û
>W09105065
AAOM01000024
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
5630
5704
+
Asn
GTT
[ENA]
¡û
>W141809056
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
505158
505084
-
Asn
GTT
[ENA]
¡û
>C141007762
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
673071
673145
+
Asn
GTT
[Ensembl]
¡û
>W1810107548
PHFC01000047
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
428
354
-
Asn
GTT
[ENA]
¡û
>W1810107592
PHFD01000098
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
5605
5679
+
Asn
GTT
[ENA]
¡û
>W1810603264
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
464690
464764
+
Asn
GTT
[ENA]
¡û
>W1810603306
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
551278
551352
+
Asn
GTT
[ENA]
¡û
>C151003205
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
653289
653363
+
Asn
GTT
[Ensembl]
¡û
>C151015122
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
692463
692537
+
Asn
GTT
[Ensembl]
¡û
>C151015215
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
611176
611250
+
Asn
GTT
[Ensembl]
¡û
>SRA1029344
SRR035087.112547
454 Sequencing (SRP001808)
71
145
+
Asn
GTT
[SRA]
>W10109931
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456634
456708
+
Asn
GTT
[ENA]
¡û
>C10105206
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
657883
657957
+
Asn
GTT
[Ensembl]
¡û
>C10105252
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
665039
665113
+
Asn
GTT
[Ensembl]
¡û
>W11112368
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456634
456708
+
Asn
GTT
[ENA]
¡û
>C161000327
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
690292
690366
+
Asn
GTT
-
¡û
>C161031498
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
651600
651674
+
Asn
GTT
[Ensembl]
¡û
>C131012537
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
752979
753053
+
Asn
GTT
[Ensembl]
¡û
>C131012583
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
687520
687594
+
Asn
GTT
[Ensembl]
¡û
>W1610521011
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
563407
563481
+
Asn
GTT
[ENA]
¡û
>W1610541316
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
604072
604146
+
Asn
GTT
[ENA]
¡û
>W1611032051
LZFK01000014
Chloroflexota
Dehalococcoides mccartyi [LZFK]
21
95
+
Asn
GTT
[ENA]
¡û
>W1710617261
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
563407
563481
+
Asn
GTT
[ENA]
¡û
>W1710644447
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
604072
604146
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK