This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180080 (41 seq.)
>W1711272482
LZFJ01000007
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
40612
40696
+
Leu
TAA
[ENA]
¡û
>W1711272497
LZFK01000004
Chloroflexota
Dehalococcoides mccartyi [LZFK]
40686
40602
-
Leu
TAA
[ENA]
¡û
>C171063625
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1204965
1205049
+
Leu
TAA
-
¡û
>C171100356
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
1214147
1214231
+
Leu
TAA
-
¡û
>C171100401
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
1156554
1156638
+
Leu
TAA
-
¡û
>C171100446
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1289449
1289533
+
Leu
TAA
-
¡û
>C171100492
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1255305
1255389
+
Leu
TAA
-
¡û
>C171101367
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1203741
1203825
+
Leu
TAA
-
¡û
>C171101934
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1112563
1112647
+
Leu
TAA
-
¡û
>C171101980
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1130264
1130348
+
Leu
TAA
-
¡û
>C171102521
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1181454
1181538
+
Leu
TAA
-
¡û
>C007600
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1227433
1227517
+
Leu
TAA
[Ensembl]
¡û
>C007647
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1121299
1121383
+
Leu
TAA
[Ensembl]
¡û
>C007693
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
1309338
1309422
+
Leu
TAA
[Ensembl]
¡û
>WENV170658993
JXWO01000020
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
32763
32847
+
Leu
TAA
[ENA]
¢þ
>C181003139
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
1172981
1173065
+
Leu
TAA
-
¡û
>C191160382
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1201947
1202031
+
Leu
TAA
-
¡û
>W09105030
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
32742
32826
+
Leu
TAA
[ENA]
¡û
>W141809064
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
24453
24369
-
Leu
TAA
[ENA]
¡û
>W1810107559
PHFC01000066
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
250
166
-
Leu
TAA
[ENA]
¡û
>W1810107597
PHFD01000104
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
3740
3656
-
Leu
TAA
[ENA]
¡û
>W1810266170
PQVQ01000004
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
338254
338338
+
Leu
TAA
[ENA]
¡û
>W1810603289
QGLC01000012
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
30077
30161
+
Leu
TAA
[ENA]
¡û
>W1810603328
QGLD01000011
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
243385
243469
+
Leu
TAA
[ENA]
¡û
>C151015177
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
1226494
1226578
+
Leu
TAA
[Ensembl]
¡û
>C151015223
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1134463
1134547
+
Leu
TAA
[Ensembl]
¡û
>W10109956
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
213113
213197
+
Leu
TAA
[ENA]
¡û
>C10105214
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1098897
1098981
+
Leu
TAA
[Ensembl]
¡û
>W11112393
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
213113
213197
+
Leu
TAA
[ENA]
¡û
>C161000335
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1188400
1188484
+
Leu
TAA
-
¡û
>C161031506
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1168539
1168623
+
Leu
TAA
[Ensembl]
¡û
>C131012545
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1233640
1233724
+
Leu
TAA
[Ensembl]
¡û
>C131012591
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1217583
1217667
+
Leu
TAA
[Ensembl]
¡û
>W1610520986
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
438730
438814
+
Leu
TAA
[ENA]
¡û
>W1610521036
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
32860
32776
-
Leu
TAA
[ENA]
¡û
>W1610541324
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1118131
1118215
+
Leu
TAA
[ENA]
¡û
>W1611032010
LZFJ01000007
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
40612
40696
+
Leu
TAA
[ENA]
¡û
>W1611032025
LZFK01000004
Chloroflexota
Dehalococcoides mccartyi [LZFK]
40686
40602
-
Leu
TAA
[ENA]
¡û
>W1710617236
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
438730
438814
+
Leu
TAA
[ENA]
¡û
>W1710617286
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
32860
32776
-
Leu
TAA
[ENA]
¡û
>W1710644455
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1118131
1118215
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK