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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180081 (49 seq.)
>W1711272458
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
564763
564847
+
Leu
TAG
[ENA]
¡û
>W1711272508
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
532968
532884
-
Leu
TAG
[ENA]
¡û
>C171019770
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
704211
704127
-
Leu
TAG
-
¡û
>C171063645
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
644432
644348
-
Leu
TAG
-
¡û
>C171100375
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
628024
627940
-
Leu
TAG
-
¡û
>C171100420
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
585702
585618
-
Leu
TAG
-
¡û
>C171100466
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
670356
670272
-
Leu
TAG
-
¡û
>C171100512
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
636212
636128
-
Leu
TAG
-
¡û
>C171101387
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
645973
645889
-
Leu
TAG
-
¡û
>C171101954
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
567585
567501
-
Leu
TAG
-
¡û
>C171102000
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
552426
552342
-
Leu
TAG
-
¡û
>C171102541
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
603414
603330
-
Leu
TAG
-
¡û
>C007620
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
677460
677376
-
Leu
TAG
[Ensembl]
¡û
>C007667
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
598358
598274
-
Leu
TAG
[Ensembl]
¡û
>C007713
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
698745
698661
-
Leu
TAG
[Ensembl]
¡û
>W08002876
ABFQ01000028
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
6532
6451
-
Leu
TAG
[ENA]
¡û
>WENV170659018
JXWO01000037
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
49059
48975
-
Leu
TAG
[ENA]
¢þ
>C181003159
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
568602
568518
-
Leu
TAG
-
¡û
>C191160402
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
623732
623648
-
Leu
TAG
-
¡û
>W09105047
AAOM01000008
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
34591
34675
+
Leu
TAG
[ENA]
¡û
>W141809034
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
547558
547642
+
Leu
TAG
[ENA]
¡û
>C141007790
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
593943
593859
-
Leu
TAG
[Ensembl]
¡û
>W1810107574
PHFC01000184
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1421
1505
+
Leu
TAG
[ENA]
¡û
>W1810107603
PHFD01000119
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
3253
3337
+
Leu
TAG
[ENA]
¡û
>W1810266202
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
362015
361931
-
Leu
TAG
[ENA]
¡û
>W1810603273
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
422314
422230
-
Leu
TAG
[ENA]
¡û
>C151003233
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
610969
610885
-
Leu
TAG
[Ensembl]
¡û
>C151015151
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
650134
650050
-
Leu
TAG
[Ensembl]
¡û
>C151015197
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
620388
620307
-
Leu
TAG
[Ensembl]
¡û
>C151015243
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
568774
568690
-
Leu
TAG
[Ensembl]
¡û
>W10109944
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
414238
414154
-
Leu
TAG
[ENA]
¡û
>W10116206
ADNP01000054
Chloroflexota
Dehalogenimonas lykanthroporepellens BL-DC-9 [ADNP]
2431
2348
-
Leu
TAG
[ENA]
¡û
>C10105234
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
615486
615402
-
Leu
TAG
[Ensembl]
¡û
>C10105280
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
622706
622622
-
Leu
TAG
[Ensembl]
¡û
>C10105300
CP002084
Chloroflexota
Dehalogenimonas lykanthroporepellens BL-DC-9 [CP002084]
612590
612673
+
Leu
TAG
[Ensembl]
¡û
>W11112381
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
414238
414154
-
Leu
TAG
[ENA]
¡û
>W11120875
ADNP01000054
Chloroflexota
Dehalogenimonas lykanthroporepellens BL-DC-9 [ADNP]
2431
2348
-
Leu
TAG
[ENA]
¡û
>C161000355
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
647890
647806
-
Leu
TAG
-
¡û
>C161031526
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
609200
609116
-
Leu
TAG
[Ensembl]
¡û
>C131012565
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
710580
710496
-
Leu
TAG
[Ensembl]
¡û
>C131012611
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
645118
645034
-
Leu
TAG
[Ensembl]
¡û
>W1610521014
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
521005
520921
-
Leu
TAG
[ENA]
¡û
>W1610521046
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
109709
109790
+
Leu
TAG
[ENA]
¡û
>W1610541340
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
561672
561588
-
Leu
TAG
[ENA]
¡û
>W1611031986
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
564763
564847
+
Leu
TAG
[ENA]
¡û
>W1611032036
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
532968
532884
-
Leu
TAG
[ENA]
¡û
>W1710617264
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
521005
520921
-
Leu
TAG
[ENA]
¡û
>W1710617296
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
109709
109790
+
Leu
TAG
[ENA]
¡û
>W1710644471
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
561672
561588
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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