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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653838 (49 seq.)
>W1711272459
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
636776
636850
+
Gly
TCC
[ENA]
¡û
>W1711272509
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
510562
510488
-
Gly
TCC
[ENA]
¡û
>W1711574556
MNFP01000029
Chloroflexota
Ktedonobacter sp. 13_1_40CM_4_52_4 [MNFP]
5336
5410
+
Gly
TCC
[ENA]
¡û
>C171019771
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
681850
681776
-
Gly
TCC
-
¡û
>C171063646
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
622057
621983
-
Gly
TCC
-
¡û
>C171100376
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
605740
605666
-
Gly
TCC
-
¡û
>C171100421
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
563418
563344
-
Gly
TCC
-
¡û
>C171100467
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
647961
647887
-
Gly
TCC
-
¡û
>C171100513
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
613817
613743
-
Gly
TCC
-
¡û
>C171101388
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
623580
623506
-
Gly
TCC
-
¡û
>C171101955
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
545189
545115
-
Gly
TCC
-
¡û
>C171102001
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
530031
529957
-
Gly
TCC
-
¡û
>C171102542
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
581047
580973
-
Gly
TCC
-
¡û
>C007621
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
655065
654991
-
Gly
TCC
[Ensembl]
¡û
>C007668
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
567784
567710
-
Gly
TCC
[Ensembl]
¡û
>C007714
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
676463
676389
-
Gly
TCC
[Ensembl]
¡û
>WENV181192817
OEPS011070754
[OEPS] soil metagenome; soil
126
198
+
Gly
TCC
[ENA]
¢þ
>W08002870
ABFQ01000023
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
21533
21462
-
Gly
TCC
[ENA]
¡û
>WENV181413987
OGCK01186704
[OGCK] hot springs metagenome; hot spring sediment
329
403
+
Gly
TCC
[ENA]
¢þ
>WENV183663374
ORJL010278278
[ORJL] groundwater metagenome; groundwater
565
491
-
Gly
TCC
[ENA]
¢þ
>WENV170659019
JXWO01000037
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
26466
26392
-
Gly
TCC
[ENA]
¢þ
>C181003160
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
546313
546239
-
Gly
TCC
-
¡û
>C191160403
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
601356
601282
-
Gly
TCC
-
¡û
>W141809035
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
569934
570008
+
Gly
TCC
[ENA]
¡û
>C141007791
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
571582
571508
-
Gly
TCC
[Ensembl]
¡û
>W1810107550
PHFC01000052
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
2673
2747
+
Gly
TCC
[ENA]
¡û
>W1810266203
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
339723
339649
-
Gly
TCC
[ENA]
¡û
>W1810603274
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
399927
399853
-
Gly
TCC
[ENA]
¡û
>W1810603310
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
486534
486460
-
Gly
TCC
[ENA]
¡û
>C151003234
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
588608
588534
-
Gly
TCC
[Ensembl]
¡û
>C151015152
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
627773
627699
-
Gly
TCC
[Ensembl]
¡û
>C151015198
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
596106
596032
-
Gly
TCC
[Ensembl]
¡û
>C151015244
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
546399
546325
-
Gly
TCC
[Ensembl]
¡û
>W10109945
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
391841
391767
-
Gly
TCC
[ENA]
¡û
>C10105235
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
593089
593015
-
Gly
TCC
[Ensembl]
¡û
>C10105281
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
600341
600267
-
Gly
TCC
[Ensembl]
¡û
>W11112382
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
391841
391767
-
Gly
TCC
[ENA]
¡û
>C161000356
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
625495
625421
-
Gly
TCC
-
¡û
>C161031527
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
586824
586750
-
Gly
TCC
[Ensembl]
¡û
>C131012566
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
688184
688110
-
Gly
TCC
[Ensembl]
¡û
>C131012612
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
622727
622653
-
Gly
TCC
[Ensembl]
¡û
>W1610521015
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
498613
498539
-
Gly
TCC
[ENA]
¡û
>W1610521047
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
133948
134022
+
Gly
TCC
[ENA]
¡û
>W1610541341
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
539275
539201
-
Gly
TCC
[ENA]
¡û
>W1611031987
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
636776
636850
+
Gly
TCC
[ENA]
¡û
>W1611032037
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
510562
510488
-
Gly
TCC
[ENA]
¡û
>W1710617265
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
498613
498539
-
Gly
TCC
[ENA]
¡û
>W1710617297
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
133948
134022
+
Gly
TCC
[ENA]
¡û
>W1710644472
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
539275
539201
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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