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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45756 (30 seq.)
>W1711272512
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
390748
390659
-
Ser
TGA
[ENA]
¡û
>C171063649
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
502241
502152
-
Ser
TGA
-
¡û
>C171100470
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
528143
528054
-
Ser
TGA
-
¡û
>C171100516
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
493999
493910
-
Ser
TGA
-
¡û
>C171101391
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
503764
503675
-
Ser
TGA
-
¡û
>C171101958
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
425557
425468
-
Ser
TGA
-
¡û
>C171102004
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
410214
410125
-
Ser
TGA
-
¡û
>C171102545
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
461229
461140
-
Ser
TGA
-
¡û
>C007624
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
535260
535171
-
Ser
TGA
[Ensembl]
¡û
>C007671
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
447957
447868
-
Ser
TGA
[Ensembl]
¡û
>WENV170659003
JXWO01000027
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
3398
3309
-
Ser
TGA
[ENA]
¢þ
>W09105060
AAOM01000019
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
13291
13380
+
Ser
TGA
[ENA]
¡û
>C191160406
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
481542
481453
-
Ser
TGA
-
¡û
>W141809038
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
689752
689841
+
Ser
TGA
[ENA]
¡û
>W1810107564
PHFC01000123
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
2848
2937
+
Ser
TGA
[ENA]
¡û
>W1810603277
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
280183
280094
-
Ser
TGA
[ENA]
¡û
>W1810603313
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
366818
366729
-
Ser
TGA
[ENA]
¡û
>C151015247
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
426572
426483
-
Ser
TGA
[Ensembl]
¡û
>W10109948
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
272025
271936
-
Ser
TGA
[ENA]
¡û
>C10105238
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
473273
473184
-
Ser
TGA
[Ensembl]
¡û
>W11112385
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
272025
271936
-
Ser
TGA
[ENA]
¡û
>C161000359
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
505932
505843
-
Ser
TGA
-
¡û
>C161031530
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
467006
466917
-
Ser
TGA
[Ensembl]
¡û
>C131012569
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
568370
568281
-
Ser
TGA
[Ensembl]
¡û
>C131012615
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
502918
502829
-
Ser
TGA
[Ensembl]
¡û
>W1610521018
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
379237
379148
-
Ser
TGA
[ENA]
¡û
>W1610541344
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
419461
419372
-
Ser
TGA
[ENA]
¡û
>W1611032040
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
390748
390659
-
Ser
TGA
[ENA]
¡û
>W1710617268
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
379237
379148
-
Ser
TGA
[ENA]
¡û
>W1710644475
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
419461
419372
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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