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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240655 (47 seq.)
>W1711272466
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
638893
638816
-
Pro
TGG
[ENA]
¡û
>W1711272504
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
507963
508040
+
Pro
TGG
[ENA]
¡û
>C171019739
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
679734
679811
+
Pro
TGG
-
¡û
>C171063610
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
619458
619535
+
Pro
TGG
-
¡û
>C171100341
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
603620
603697
+
Pro
TGG
-
¡û
>C171100386
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
561298
561375
+
Pro
TGG
-
¡û
>C171100431
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
645361
645438
+
Pro
TGG
-
¡û
>C171100477
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
611217
611294
+
Pro
TGG
-
¡û
>C171101352
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
620981
621058
+
Pro
TGG
-
¡û
>C171101919
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
542589
542666
+
Pro
TGG
-
¡û
>C171101965
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
527431
527508
+
Pro
TGG
-
¡û
>C171102506
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
578447
578524
+
Pro
TGG
-
¡û
>C007585
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
652466
652543
+
Pro
TGG
[Ensembl]
¡û
>C007632
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
565185
565262
+
Pro
TGG
[Ensembl]
¡û
>C007678
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
674395
674472
+
Pro
TGG
[Ensembl]
¡û
>W08002869
ABFQ01000023
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
19417
19494
+
Pro
TGG
[ENA]
¡û
>WENV170659015
JXWO01000037
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
23870
23947
+
Pro
TGG
[ENA]
¢þ
>C181003124
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
544196
544273
+
Pro
TGG
-
¡û
>C191160367
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
598757
598834
+
Pro
TGG
-
¡û
>W09105051
AAOM01000010
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
34225
34302
+
Pro
TGG
[ENA]
¡û
>W141809049
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
572533
572456
-
Pro
TGG
[ENA]
¡û
>C141007755
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
569466
569543
+
Pro
TGG
[Ensembl]
¡û
>W1810107552
PHFC01000052
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
5272
5195
-
Pro
TGG
[ENA]
¡û
>W1810107623
PHFD01000423
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
621
698
+
Pro
TGG
[ENA]
¡û
>W1810266186
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
337606
337683
+
Pro
TGG
[ENA]
¡û
>W1810603258
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
397329
397406
+
Pro
TGG
[ENA]
¡û
>W1810603300
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
483936
484013
+
Pro
TGG
[ENA]
¡û
>C151003198
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
586492
586569
+
Pro
TGG
[Ensembl]
¡û
>C151015115
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
625657
625734
+
Pro
TGG
[Ensembl]
¡û
>C151015162
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
594029
594106
+
Pro
TGG
[Ensembl]
¡û
>C151015208
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
543800
543877
+
Pro
TGG
[Ensembl]
¡û
>W10109924
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
389242
389319
+
Pro
TGG
[ENA]
¡û
>C10105199
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
590490
590567
+
Pro
TGG
[Ensembl]
¡û
>C10105245
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
598225
598302
+
Pro
TGG
[Ensembl]
¡û
>W11112361
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
389242
389319
+
Pro
TGG
[ENA]
¡û
>C161000320
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
622896
622973
+
Pro
TGG
-
¡û
>C161031491
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
584225
584302
+
Pro
TGG
[Ensembl]
¡û
>C131012530
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
685585
685662
+
Pro
TGG
[Ensembl]
¡û
>C131012576
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
620127
620204
+
Pro
TGG
[Ensembl]
¡û
>W1610521004
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
496013
496090
+
Pro
TGG
[ENA]
¡û
>W1610521027
JGYD01000010
Chloroflexota
Dehalococcoides mccartyi [JGYD]
2273
2196
-
Pro
TGG
[ENA]
¡û
>W1610541309
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
536676
536753
+
Pro
TGG
[ENA]
¡û
>W1611031994
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
638893
638816
-
Pro
TGG
[ENA]
¡û
>W1611032032
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
507963
508040
+
Pro
TGG
[ENA]
¡û
>W1710617254
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
496013
496090
+
Pro
TGG
[ENA]
¡û
>W1710617277
JGYD01000010
Chloroflexota
Dehalococcoides mccartyi [JGYD]
2273
2196
-
Pro
TGG
[ENA]
¡û
>W1710644440
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
536676
536753
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK