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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452420 (45 seq.)
>W1711272451
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
328479
328551
+
Thr
TGT
[ENA]
¡û
>C171019763
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
935709
935637
-
Thr
TGT
-
¡û
>C171063638
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
835338
835266
-
Thr
TGT
-
¡û
>C171100368
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
813210
813138
-
Thr
TGT
-
¡û
>C171100413
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
770886
770814
-
Thr
TGT
-
¡û
>C171100459
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
891085
891013
-
Thr
TGT
-
¡û
>C171100505
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
856941
856869
-
Thr
TGT
-
¡û
>C171101380
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
865713
865641
-
Thr
TGT
-
¡û
>C171101947
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
754833
754761
-
Thr
TGT
-
¡û
>C171101993
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
761348
761276
-
Thr
TGT
-
¡û
>C171102534
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
812336
812264
-
Thr
TGT
-
¡û
>C007613
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
875219
875147
-
Thr
TGT
[Ensembl]
¡û
>C007660
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
785604
785532
-
Thr
TGT
[Ensembl]
¡û
>C007706
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
913675
913603
-
Thr
TGT
[Ensembl]
¡û
>W08002853
ABFQ01000011
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
13524
13452
-
Thr
TGT
[ENA]
¡û
>WENV170658997
JXWO01000024
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
32358
32286
-
Thr
TGT
[ENA]
¢þ
>C181003152
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
796680
796608
-
Thr
TGT
-
¡û
>W09105058
AAOM01000015
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
147
75
-
Thr
TGT
[ENA]
¡û
>C191160395
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
817920
817848
-
Thr
TGT
-
¡û
>W141809027
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
360309
360381
+
Thr
TGT
[ENA]
¡û
>C141007783
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
819959
819887
-
Thr
TGT
[Ensembl]
¡û
>W1810107565
PHFC01000137
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
619
547
-
Thr
TGT
[ENA]
¡û
>W1810107600
PHFD01000107
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
2701
2629
-
Thr
TGT
[ENA]
¡û
>W1810266195
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
547220
547148
-
Thr
TGT
[ENA]
¡û
>W1810603266
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
609451
609379
-
Thr
TGT
[ENA]
¡û
>W1810603315
QGLD01000009
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
48450
48378
-
Thr
TGT
[ENA]
¡û
>C151003226
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
803598
803526
-
Thr
TGT
[Ensembl]
¡û
>C151015144
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
839343
839271
-
Thr
TGT
[Ensembl]
¡û
>C151015190
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
877558
877486
-
Thr
TGT
[Ensembl]
¡û
>C151015236
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
798651
798579
-
Thr
TGT
[Ensembl]
¡û
>W10109937
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
601485
601413
-
Thr
TGT
[ENA]
¡û
>C10105227
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
802734
802662
-
Thr
TGT
[Ensembl]
¡û
>C10105273
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
808438
808366
-
Thr
TGT
[Ensembl]
¡û
>W11112374
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
601485
601413
-
Thr
TGT
[ENA]
¡û
>C161000348
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
835122
835050
-
Thr
TGT
-
¡û
>C161031519
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
832683
832611
-
Thr
TGT
[Ensembl]
¡û
>C131012558
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
897832
897760
-
Thr
TGT
[Ensembl]
¡û
>C131012604
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
876605
876533
-
Thr
TGT
[Ensembl]
¡û
>W1610520995
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
86955
86883
-
Thr
TGT
[ENA]
¡û
>W1610521061
JGYD01000029
Chloroflexota
Dehalococcoides mccartyi [JGYD]
18645
18717
+
Thr
TGT
[ENA]
¡û
>W1610541333
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
748925
748853
-
Thr
TGT
[ENA]
¡û
>W1611031979
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
328479
328551
+
Thr
TGT
[ENA]
¡û
>W1710617245
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
86955
86883
-
Thr
TGT
[ENA]
¡û
>W1710617311
JGYD01000029
Chloroflexota
Dehalococcoides mccartyi [JGYD]
18645
18717
+
Thr
TGT
[ENA]
¡û
>W1710644464
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
748925
748853
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK