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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452419 (47 seq.)
>W1711272487
LZFJ01000008
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
198526
198601
+
Glu
TTC
[ENA]
¡û
>W1711272515
LZFK01000007
Chloroflexota
Dehalococcoides mccartyi [LZFK]
64707
64782
+
Glu
TTC
[ENA]
¡û
>C171019777
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
95439
95364
-
Glu
TTC
-
¡û
>C171063632
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1357655
1357580
-
Glu
TTC
-
¡û
>C171100363
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
1312539
1312464
-
Glu
TTC
-
¡û
>C171100408
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
1254945
1254870
-
Glu
TTC
-
¡û
>C171100453
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1411794
1411719
-
Glu
TTC
-
¡û
>C171100499
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1377650
1377575
-
Glu
TTC
-
¡û
>C171101374
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1320817
1320742
-
Glu
TTC
-
¡û
>C171101941
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1343236
1343161
-
Glu
TTC
-
¡û
>C171101987
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1321064
1320989
-
Glu
TTC
-
¡û
>C171102528
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1372247
1372172
-
Glu
TTC
-
¡û
>C007607
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1325210
1325135
-
Glu
TTC
[Ensembl]
¡û
>C007654
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1378835
1378760
-
Glu
TTC
[Ensembl]
¡û
>C007700
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
1453055
1452980
-
Glu
TTC
[Ensembl]
¡û
>W08002842
ABFQ01000002
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
110736
110664
-
Glu
TTC
[ENA]
¡û
>WENV170659000
JXWO01000025
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
75543
75618
+
Glu
TTC
[ENA]
¢þ
>C181003146
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
1371117
1371042
-
Glu
TTC
-
¡û
>C191160389
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1405691
1405616
-
Glu
TTC
-
¡û
>W09105038
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
139056
138981
-
Glu
TTC
[ENA]
¡û
>W141809041
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
1178886
1178961
+
Glu
TTC
[ENA]
¡û
>C141007777
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
1390759
1390684
-
Glu
TTC
[Ensembl]
¡û
>W1810107554
PHFC01000064
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1219
1144
-
Glu
TTC
[ENA]
¡û
>W1810107622
PHFD01000422
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
1168
1243
+
Glu
TTC
[ENA]
¡û
>W1810266179
PQVQ01000014
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
114045
114120
+
Glu
TTC
[ENA]
¡û
>W1810603254
QGLC01000001
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
60417
60342
-
Glu
TTC
[ENA]
¡û
>W1810603296
QGLD01000001
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
33525
33450
-
Glu
TTC
[ENA]
¡û
>C151003220
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
1456892
1456817
-
Glu
TTC
[Ensembl]
¡û
>C151015138
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
1470025
1469950
-
Glu
TTC
[Ensembl]
¡û
>C151015184
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
1365643
1365568
-
Glu
TTC
[Ensembl]
¡û
>C151015230
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1345484
1345409
-
Glu
TTC
[Ensembl]
¡û
>W10109966
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
108936
108861
-
Glu
TTC
[ENA]
¡û
>C10105221
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1343470
1343395
-
Glu
TTC
[Ensembl]
¡û
>C10105267
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
1396801
1396726
-
Glu
TTC
[Ensembl]
¡û
>W11112403
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
108936
108861
-
Glu
TTC
[ENA]
¡û
>C161000342
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1434387
1434312
-
Glu
TTC
-
¡û
>C161031513
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1445309
1445234
-
Glu
TTC
[Ensembl]
¡û
>C131012552
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1415234
1415159
-
Glu
TTC
[Ensembl]
¡û
>C131012598
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1435668
1435593
-
Glu
TTC
[Ensembl]
¡û
>W1610520975
JGVX01000001
Chloroflexota
Dehalococcoides mccartyi [JGVX]
75289
75364
+
Glu
TTC
[ENA]
¡û
>W1610521060
JGYD01000027
Chloroflexota
Dehalococcoides mccartyi [JGYD]
59313
59238
-
Glu
TTC
[ENA]
¡û
>W1610541305
JSWM01000006
Chloroflexota
Dehalococcoides mccartyi [JSWM]
60507
60432
-
Glu
TTC
[ENA]
¡û
>W1611032015
LZFJ01000008
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
198526
198601
+
Glu
TTC
[ENA]
¡û
>W1611032043
LZFK01000007
Chloroflexota
Dehalococcoides mccartyi [LZFK]
64707
64782
+
Glu
TTC
[ENA]
¡û
>W1710617225
JGVX01000001
Chloroflexota
Dehalococcoides mccartyi [JGVX]
75289
75364
+
Glu
TTC
[ENA]
¡û
>W1710617310
JGYD01000027
Chloroflexota
Dehalococcoides mccartyi [JGYD]
59313
59238
-
Glu
TTC
[ENA]
¡û
>W1710644436
JSWM01000006
Chloroflexota
Dehalococcoides mccartyi [JSWM]
60507
60432
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK