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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.779606 (43 seq.)
>W1711272473
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
522557
522484
-
Gln
TTG
[ENA]
¡û
>C171019745
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
746456
746529
+
Gln
TTG
-
¡û
>C171063616
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
686748
686821
+
Gln
TTG
-
¡û
>C171100347
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
670232
670305
+
Gln
TTG
-
¡û
>C171100392
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
627910
627983
+
Gln
TTG
-
¡û
>C171100437
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
712674
712747
+
Gln
TTG
-
¡û
>C171100483
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
678530
678603
+
Gln
TTG
-
¡û
>C171101358
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
688291
688364
+
Gln
TTG
-
¡û
>C171101925
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
609898
609971
+
Gln
TTG
-
¡û
>C171101971
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
594741
594814
+
Gln
TTG
-
¡û
>C171102512
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
645729
645802
+
Gln
TTG
-
¡û
>C007591
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
719772
719845
+
Gln
TTG
[Ensembl]
¡û
>C007638
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
640671
640744
+
Gln
TTG
[Ensembl]
¡û
>C007684
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
740952
741025
+
Gln
TTG
[Ensembl]
¡û
>W08002837
ABFQ01000001
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
126557
126487
-
Gln
TTG
[ENA]
¡û
>WENV170659006
JXWO01000028
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
39948
40021
+
Gln
TTG
[ENA]
¢þ
>C181003130
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
652237
652310
+
Gln
TTG
-
¡û
>C191160373
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
666048
666121
+
Gln
TTG
-
¡û
>W09105064
AAOM01000024
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
5546
5619
+
Gln
TTG
[ENA]
¡û
>W141809055
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
505242
505169
-
Gln
TTG
[ENA]
¡û
>C141007761
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
672987
673060
+
Gln
TTG
[Ensembl]
¡û
>W1810107547
PHFC01000047
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
512
439
-
Gln
TTG
[ENA]
¡û
>W1810107591
PHFD01000098
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
5521
5594
+
Gln
TTG
[ENA]
¡û
>W1810266192
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
404225
404298
+
Gln
TTG
[ENA]
¡û
>C151003204
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
653205
653278
+
Gln
TTG
[Ensembl]
¡û
>C151015121
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
692379
692452
+
Gln
TTG
[Ensembl]
¡û
>C151015168
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
662584
662657
+
Gln
TTG
[Ensembl]
¡û
>C151015214
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
611092
611165
+
Gln
TTG
[Ensembl]
¡û
>W10109930
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456550
456623
+
Gln
TTG
[ENA]
¡û
>C10105205
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
657799
657872
+
Gln
TTG
[Ensembl]
¡û
>C10105251
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
664955
665028
+
Gln
TTG
[Ensembl]
¡û
>W11112367
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456550
456623
+
Gln
TTG
[ENA]
¡û
>C161000326
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
690208
690281
+
Gln
TTG
-
¡û
>C161031497
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
651516
651589
+
Gln
TTG
[Ensembl]
¡û
>C131012536
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
752895
752968
+
Gln
TTG
[Ensembl]
¡û
>C131012582
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
687436
687509
+
Gln
TTG
[Ensembl]
¡û
>W1610521010
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
563323
563396
+
Gln
TTG
[ENA]
¡û
>W1610521053
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
67499
67426
-
Gln
TTG
[ENA]
¡û
>W1610541315
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
603988
604061
+
Gln
TTG
[ENA]
¡û
>W1611032001
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
522557
522484
-
Gln
TTG
[ENA]
¡û
>W1710617260
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
563323
563396
+
Gln
TTG
[ENA]
¡û
>W1710617303
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
67499
67426
-
Gln
TTG
[ENA]
¡û
>W1710644446
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
603988
604061
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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