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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = ACG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195535 (18 seq.)
>WENV170956815
MJUP01252721
[MJUP] soil metagenome; viral particles from soil sample MGM
244
168
-
Arg
ACG
[ENA]
¡û
>WENV171003646
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
3144
3068
-
Arg
ACG
[ENA]
¡û
>PL191000521
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20845
20770
-
Arg
ACG
[ENA]
¡û
>C181137722
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4437593
4437668
+
Arg
ACG
-
¡û
>W1911118834
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19791
19866
+
Arg
ACG
[ENA]
¡û
>PL201000407
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88914
88839
-
Arg
ACG
[ENA]
¡û
>PL201000430
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4784
4709
-
Arg
ACG
[ENA]
¡û
>PL201000447
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
43288
43214
-
Arg
ACG
[ENA]
¡û
>W2011012085
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19791
19866
+
Arg
ACG
[ENA]
¡û
>W2110229576
JACJQI010000039
Cyanobacteriota
Aulosira sp. FACHB-113 [JACJQI]
55373
55447
+
Arg
ACG
[ENA]
¡û
>W2110229662
JACJQJ010000151
Cyanobacteriota
Nostoc linckia FACHB-104 [JACJQJ]
1295
1369
+
Arg
ACG
[ENA]
¡û
>W2110230817
JACJRG010000091
Cyanobacteriota
Anabaena minutissima FACHB-250 [JACJRG]
3375
3300
-
Arg
ACG
[ENA]
¡û
>W2110232117
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
50858
50933
+
Arg
ACG
[ENA]
¡û
>W2110233104
JACJTD010000050
Cyanobacteriota
Nostoc foliaceum FACHB-393 [JACJTD]
26510
26435
-
Arg
ACG
[ENA]
¡û
>W2110312901
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
26332
26407
+
Arg
ACG
[ENA]
¡û
>C201083653
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4533688
4533613
-
Arg
ACG
-
¡û
>C211013091
AP023441
Cyanobacteriota
Nostoc sp. MS1 [AP023441]
6083882
6083958
+
Arg
ACG
-
¡û
>W2130014962
JACJQW010000049
Cyanobacteriota
Nostoc sp. FACHB-190 [JACJQW]
24176
24251
+
Arg
ACG
[ENA]
¡û
Identical group No.207530 (38 seq.)
>W1711081257
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
23919
23843
-
Arg
ACG
[ENA]
¡û
>W1910596227
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26159
26234
+
Arg
ACG
[ENA]
¡û
>W1910596311
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26160
26235
+
Arg
ACG
[ENA]
¡û
>W1910596392
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26160
26235
+
Arg
ACG
[ENA]
¡û
>W1910596474
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26158
26233
+
Arg
ACG
[ENA]
¡û
>W1910596554
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26151
26226
+
Arg
ACG
[ENA]
¡û
>W1910596625
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
26113
26038
-
Arg
ACG
[ENA]
¡û
>W1910596702
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26158
26233
+
Arg
ACG
[ENA]
¡û
>W1910596770
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
27340
27415
+
Arg
ACG
[ENA]
¡û
>W1910596846
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26142
26217
+
Arg
ACG
[ENA]
¡û
>W1910596958
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
26380
26455
+
Arg
ACG
[ENA]
¡û
>W1910597004
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28063
28138
+
Arg
ACG
[ENA]
¡û
>W1910597129
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26143
26218
+
Arg
ACG
[ENA]
¡û
>W1910597225
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
55780
55855
+
Arg
ACG
[ENA]
¡û
>W1910646681
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24336
24261
-
Arg
ACG
[ENA]
¡û
>PL201000720
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
36327
36402
+
Arg
ACG
[ENA]
¡û
>W2010745199
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55113
55188
+
Arg
ACG
[ENA]
¡û
>W2010745395
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
9985
10060
+
Arg
ACG
[ENA]
¡û
>W2010745505
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
8920
8995
+
Arg
ACG
[ENA]
¡û
>W2010766570
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26159
26234
+
Arg
ACG
[ENA]
¡û
>W2010766654
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26160
26235
+
Arg
ACG
[ENA]
¡û
>W2010766735
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26160
26235
+
Arg
ACG
[ENA]
¡û
>W2010766817
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26158
26233
+
Arg
ACG
[ENA]
¡û
>W2010766897
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26151
26226
+
Arg
ACG
[ENA]
¡û
>W2010766968
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
26113
26038
-
Arg
ACG
[ENA]
¡û
>W2010767045
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26158
26233
+
Arg
ACG
[ENA]
¡û
>W2010767113
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
27340
27415
+
Arg
ACG
[ENA]
¡û
>W2010767189
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26142
26217
+
Arg
ACG
[ENA]
¡û
>W2010767301
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
26380
26455
+
Arg
ACG
[ENA]
¡û
>W2010767347
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28063
28138
+
Arg
ACG
[ENA]
¡û
>W2010767472
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26143
26218
+
Arg
ACG
[ENA]
¡û
>W2010767568
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
55780
55855
+
Arg
ACG
[ENA]
¡û
>W2010791989
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24336
24261
-
Arg
ACG
[ENA]
¡û
>W2012458229
WVID01000040
Cyanobacteriota
Nostoc sp. B(2019) [WVID]
8998
8924
-
Arg
ACG
[ENA]
¡û
>W2110230648
JACJRD010000050
Cyanobacteriota
Calothrix sp. FACHB-156 [JACJRD]
33198
33124
-
Arg
ACG
[ENA]
¡û
>C201085196
CP040297
Cyanobacteriota
Nostoc sp. TCL26-01 [CP040297]
3023473
3023548
+
Arg
ACG
-
¡û
>W2110781102
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
19734
19809
+
Arg
ACG
[ENA]
¡û
>W2130044895
WBKN01000816
Cyanobacteriota
Nostoc commune BAE [WBKN]
15786
15861
+
Arg
ACG
[ENA]
¡û
Identical group No.279176 (1 seq.)
>PL203000100
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
22532
22456
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK