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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = ACG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195535 (18 seq.)
>WENV170956815
MJUP01252721
[MJUP] soil metagenome; viral particles from soil sample MGM
244
168
-
Arg
ACG
[ENA]
¡û
>WENV171003646
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
3144
3068
-
Arg
ACG
[ENA]
¡û
>PL191000521
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20845
20770
-
Arg
ACG
[ENA]
¡û
>C181137722
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4437593
4437668
+
Arg
ACG
-
¡û
>W1911118834
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19791
19866
+
Arg
ACG
[ENA]
¡û
>PL201000407
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88914
88839
-
Arg
ACG
[ENA]
¡û
>PL201000430
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4784
4709
-
Arg
ACG
[ENA]
¡û
>PL201000447
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
43288
43214
-
Arg
ACG
[ENA]
¡û
>W2011012085
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19791
19866
+
Arg
ACG
[ENA]
¡û
>W2110229576
JACJQI010000039
Cyanobacteriota
Aulosira sp. FACHB-113 [JACJQI]
55373
55447
+
Arg
ACG
[ENA]
¡û
>W2110229662
JACJQJ010000151
Cyanobacteriota
Nostoc linckia FACHB-104 [JACJQJ]
1295
1369
+
Arg
ACG
[ENA]
¡û
>W2110230817
JACJRG010000091
Cyanobacteriota
Anabaena minutissima FACHB-250 [JACJRG]
3375
3300
-
Arg
ACG
[ENA]
¡û
>W2110232117
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
50858
50933
+
Arg
ACG
[ENA]
¡û
>W2110233104
JACJTD010000050
Cyanobacteriota
Nostoc foliaceum FACHB-393 [JACJTD]
26510
26435
-
Arg
ACG
[ENA]
¡û
>W2110312901
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
26332
26407
+
Arg
ACG
[ENA]
¡û
>C201083653
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4533688
4533613
-
Arg
ACG
-
¡û
>C211013091
AP023441
Cyanobacteriota
Nostoc sp. MS1 [AP023441]
6083882
6083958
+
Arg
ACG
-
¡û
>W2130014962
JACJQW010000049
Cyanobacteriota
Nostoc sp. FACHB-190 [JACJQW]
24176
24251
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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