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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = CAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175378 (2 seq.)
>PL201000411
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88588
88511
-
Leu
CAA
[ENA]
¡û
>C201083656
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4533338
4533261
-
Leu
CAA
-
¡û
Identical group No.182897 (2 seq.)
>PL201000450
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
42865
42788
-
Leu
CAA
[ENA]
¡û
>W2110230821
JACJRG010000091
Cyanobacteriota
Anabaena minutissima FACHB-250 [JACJRG]
2944
2867
-
Leu
CAA
[ENA]
¡û
Identical group No.279180 (1 seq.)
>PL201000879
CP051207
Cyanobacteriota
Dolichospermum flos-aquae CCAP 1403/13F CCAP 1403/13f plasmid:pAfl69 [CP051207]
1000
926
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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