This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = CAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.750880 (8 seq.)
>PL191000450
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
616020
615946
-
Met
CAT
[ENA]
¡û
>PL191000518
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
21380
21306
-
Met
CAT
[ENA]
¡û
>W1910646678
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24747
24673
-
Met
CAT
[ENA]
¡û
>PL201000404
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
89453
89379
-
Ile2
CAT
[ENA]
¡û
>PL201000427
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
5319
5245
-
Ile2
CAT
[ENA]
¡û
>PL201000717
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
35916
35990
+
Ile2
CAT
[ENA]
¡û
>W2010791986
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24747
24673
-
Ile2
CAT
[ENA]
¡û
>C201083650
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4534228
4534154
-
Ile2
CAT
-
¡û
Identical group No.831233 (1 seq.)
>PL201000853
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
23069
22995
-
Ile2
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK