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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = CCA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.831234 (1 seq.)
>PL201000854
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
22992
22919
-
Trp
CCA
[ENA]
¡û
Identical group No.854939 (1 seq.)
>PL201000446
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
43657
43584
-
Trp
CCA
[ENA]
¡û
Identical group No.871413 (12 seq.)
>WENV171003547
NNBU01000345
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
350
278
-
Trp
CCA
[ENA]
¡û
>PL191000519
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
21303
21231
-
Trp
CCA
[ENA]
¡û
>W1910646679
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24670
24598
-
Trp
CCA
[ENA]
¡û
>W1911118832
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19333
19405
+
Trp
CCA
[ENA]
¡û
>PL201000405
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
89376
89304
-
Trp
CCA
[ENA]
¡û
>PL201000428
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
5242
5170
-
Trp
CCA
[ENA]
¡û
>PL201000718
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
35993
36065
+
Trp
CCA
[ENA]
¡û
>W2010791987
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24670
24598
-
Trp
CCA
[ENA]
¡û
>W2011012083
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19333
19405
+
Trp
CCA
[ENA]
¡û
>W2110229621
JACJQJ010000022
Cyanobacteriota
Nostoc linckia FACHB-104 [JACJQJ]
90499
90571
+
Trp
CCA
[ENA]
¡û
>W2110232115
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
50400
50472
+
Trp
CCA
[ENA]
¡û
>C201083651
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4534151
4534079
-
Trp
CCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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