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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = CCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.502033 (3 seq.)
>PL201000446
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
43657
43584
-
Trp
CCA
[ENA]
¡û
>PL201000854
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
22992
22919
-
Trp
CCA
[ENA]
¡û
>W2110230645
JACJRD010000050
Cyanobacteriota
Calothrix sp. FACHB-156 [JACJRD]
33658
33585
-
Trp
CCA
[ENA]
¡û
Identical group No.526678 (44 seq.)
>PL171000175
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
99824
99896
+
Trp
CCA
[ENA]
¡û
>WENV171003547
NNBU01000345
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
350
278
-
Trp
CCA
[ENA]
¡û
>PL191000519
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
21303
21231
-
Trp
CCA
[ENA]
¡û
>W1910596225
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
25700
25772
+
Trp
CCA
[ENA]
¡û
>W1910596309
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
25701
25773
+
Trp
CCA
[ENA]
¡û
>W1910596390
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
25701
25773
+
Trp
CCA
[ENA]
¡û
>W1910596472
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
25699
25771
+
Trp
CCA
[ENA]
¡û
>W1910596552
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
25692
25764
+
Trp
CCA
[ENA]
¡û
>W1910596623
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
26572
26500
-
Trp
CCA
[ENA]
¡û
>W1910596700
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
25699
25771
+
Trp
CCA
[ENA]
¡û
>W1910596768
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
26881
26953
+
Trp
CCA
[ENA]
¡û
>W1910596844
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
25683
25755
+
Trp
CCA
[ENA]
¡û
>W1910596956
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
25921
25993
+
Trp
CCA
[ENA]
¡û
>W1910597002
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
27604
27676
+
Trp
CCA
[ENA]
¡û
>W1910597127
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
25684
25756
+
Trp
CCA
[ENA]
¡û
>W1910597223
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
55321
55393
+
Trp
CCA
[ENA]
¡û
>W1910646679
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24670
24598
-
Trp
CCA
[ENA]
¡û
>W1911118832
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19333
19405
+
Trp
CCA
[ENA]
¡û
>PL201000405
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
89376
89304
-
Trp
CCA
[ENA]
¡û
>PL201000428
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
5242
5170
-
Trp
CCA
[ENA]
¡û
>PL201000718
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
35993
36065
+
Trp
CCA
[ENA]
¡û
>W2010766568
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
25700
25772
+
Trp
CCA
[ENA]
¡û
>W2010766652
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
25701
25773
+
Trp
CCA
[ENA]
¡û
>W2010766733
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
25701
25773
+
Trp
CCA
[ENA]
¡û
>W2010766815
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
25699
25771
+
Trp
CCA
[ENA]
¡û
>W2010766895
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
25692
25764
+
Trp
CCA
[ENA]
¡û
>W2010766966
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
26572
26500
-
Trp
CCA
[ENA]
¡û
>W2010767043
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
25699
25771
+
Trp
CCA
[ENA]
¡û
>W2010767111
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
26881
26953
+
Trp
CCA
[ENA]
¡û
>W2010767187
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
25683
25755
+
Trp
CCA
[ENA]
¡û
>W2010767299
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
25921
25993
+
Trp
CCA
[ENA]
¡û
>W2010767345
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
27604
27676
+
Trp
CCA
[ENA]
¡û
>W2010767470
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
25684
25756
+
Trp
CCA
[ENA]
¡û
>W2010767566
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
55321
55393
+
Trp
CCA
[ENA]
¡û
>W2010791987
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24670
24598
-
Trp
CCA
[ENA]
¡û
>W2011012083
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19333
19405
+
Trp
CCA
[ENA]
¡û
>W2110229621
JACJQJ010000022
Cyanobacteriota
Nostoc linckia FACHB-104 [JACJQJ]
90499
90571
+
Trp
CCA
[ENA]
¡û
>W2110232115
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
50400
50472
+
Trp
CCA
[ENA]
¡û
>W2110312563
JADEXL010000460
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
1071
999
-
Trp
CCA
[ENA]
¡û
>W2110312899
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
25870
25942
+
Trp
CCA
[ENA]
¡û
>C201083651
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4534151
4534079
-
Trp
CCA
-
¡û
>C201085195
CP040297
Cyanobacteriota
Nostoc sp. TCL26-01 [CP040297]
3023088
3023160
+
Trp
CCA
-
¡û
>W1610003569
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1377
1449
+
Trp
CCA
[ENA]
¡û
>W1710004189
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1377
1449
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK