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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = CCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306742 (10 seq.)
>W1711081253
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
24492
24417
-
Arg
CCG
[ENA]
¡û
>W1910646676
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24907
24832
-
Arg
CCG
[ENA]
¡û
>W1911118829
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19094
19169
+
Arg
CCG
[ENA]
¡û
>PL201000715
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
35756
35831
+
Arg
CCG
[ENA]
¡û
>W2010791984
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24907
24832
-
Arg
CCG
[ENA]
¡û
>W2011012080
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19094
19169
+
Arg
CCG
[ENA]
¡û
>W2110229816
JACJQM010000024
Cyanobacteriota
Nostoc sp. FACHB-888 [JACJQM]
40916
40991
+
Arg
CCG
[ENA]
¡û
>W2110233099
JACJTD010000050
Cyanobacteriota
Nostoc foliaceum FACHB-393 [JACJTD]
27068
26993
-
Arg
CCG
[ENA]
¡û
>W2110233167
JACJTE010000052
Cyanobacteriota
Nostoc linckia FACHB-391 [JACJTE]
25300
25225
-
Arg
CCG
[ENA]
¡û
>W2110781098
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
19035
19110
+
Arg
CCG
[ENA]
¡û
Identical group No.326687 (10 seq.)
>WENV171003540
NNBU01000334
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
1028
1103
+
Arg
CCG
[ENA]
¡û
>WENV171003544
NNBU01000345
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
587
512
-
Arg
CCG
[ENA]
¡û
>WENV171003664
NNBU01003492
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
108
33
-
Arg
CCG
[ENA]
¡û
>PL191000448
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
616180
616105
-
Arg
CCG
[ENA]
¡û
>PL191000516
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
21540
21465
-
Arg
CCG
[ENA]
¡û
>PL201000402
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
89613
89538
-
Arg
CCG
[ENA]
¡û
>W2110232113
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
50138
50213
+
Arg
CCG
[ENA]
¡û
>W2110312897
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
25608
25683
+
Arg
CCG
[ENA]
¡û
>C201083648
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4534388
4534313
-
Arg
CCG
-
¡û
>W2110781118
WBKM01000207
Cyanobacteriota
Nostoc sp. WHI [WBKM]
43494
43419
-
Arg
CCG
[ENA]
¡û
Identical group No.336103 (1 seq.)
>PL201000425
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
5479
5404
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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