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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = CTT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.441594 (38 seq.)
>W131058332
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4840420
4840494
+
Lys
CTT
[ENA]
¡û
>WENV171003654
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2486
2412
-
Lys
CTT
[ENA]
¡û
>W1910596235
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26904
26978
+
Lys
CTT
[ENA]
¡û
>W1910596319
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26905
26979
+
Lys
CTT
[ENA]
¡û
>W1910596400
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26905
26979
+
Lys
CTT
[ENA]
¡û
>W1910596482
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26903
26977
+
Lys
CTT
[ENA]
¡û
>W1910596562
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26896
26970
+
Lys
CTT
[ENA]
¡û
>W1910596633
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25368
25294
-
Lys
CTT
[ENA]
¡û
>W1910596710
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26903
26977
+
Lys
CTT
[ENA]
¡û
>W1910596778
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28085
28159
+
Lys
CTT
[ENA]
¡û
>W1910596854
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26887
26961
+
Lys
CTT
[ENA]
¡û
>W1910596966
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27125
27199
+
Lys
CTT
[ENA]
¡û
>W1910597012
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28808
28882
+
Lys
CTT
[ENA]
¡û
>W1910597137
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26888
26962
+
Lys
CTT
[ENA]
¡û
>W1910597233
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56525
56599
+
Lys
CTT
[ENA]
¡û
>PL201000415
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88267
88193
-
Lys
CTT
[ENA]
¡û
>W2010579384
JAAXMP010000002
Bacteroidota
Flavobacterium sp. CLA17 [JAAXMP]
278427
278501
+
Lys
CTT
[ENA]
¡û
>W2010766578
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26904
26978
+
Lys
CTT
[ENA]
¡û
>W2010766662
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26905
26979
+
Lys
CTT
[ENA]
¡û
>W2010766743
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26905
26979
+
Lys
CTT
[ENA]
¡û
>W2010766825
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26903
26977
+
Lys
CTT
[ENA]
¡û
>W2010766905
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26896
26970
+
Lys
CTT
[ENA]
¡û
>W2010766976
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25368
25294
-
Lys
CTT
[ENA]
¡û
>W2010767053
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26903
26977
+
Lys
CTT
[ENA]
¡û
>W2010767121
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28085
28159
+
Lys
CTT
[ENA]
¡û
>W2010767197
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26887
26961
+
Lys
CTT
[ENA]
¡û
>W2010767309
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27125
27199
+
Lys
CTT
[ENA]
¡û
>W2010767355
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28808
28882
+
Lys
CTT
[ENA]
¡û
>W2010767480
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26888
26962
+
Lys
CTT
[ENA]
¡û
>W2010767576
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56525
56599
+
Lys
CTT
[ENA]
¡û
>W2110229628
JACJQJ010000022
Cyanobacteriota
Nostoc linckia FACHB-104 [JACJQJ]
91952
92026
+
Lys
CTT
[ENA]
¡û
>W2110229823
JACJQM010000024
Cyanobacteriota
Nostoc sp. FACHB-888 [JACJQM]
41571
41645
+
Lys
CTT
[ENA]
¡û
>W2110231576
JACJRV010000056
Cyanobacteriota
Nostoc sp. FACHB-152 [JACJRV]
27017
26943
-
Lys
CTT
[ENA]
¡û
>W2110312910
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
27074
27148
+
Lys
CTT
[ENA]
¡û
>W2110456986
JAEVYN010000001
Cyanobacteriota
Phormidium sp. CLA17 [JAEVYN]
278427
278501
+
Lys
CTT
[ENA]
¡û
>C201083660
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4533017
4532945
-
Lys
CTT
-
¡û
>W2110781111
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
20476
20550
+
Lys
CTT
[ENA]
¡û
>W2130000746
BLAY01000080
Cyanobacteriota
Microseira wollei NIES-4236 [BLAY]
17362
17436
+
Lys
CTT
[ENA]
¡û
Identical group No.517453 (1 seq.)
>PL201000453
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
42542
42468
-
Lys
CTT
[ENA]
¡û
Identical group No.526679 (7 seq.)
>PL191000520
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
21206
21135
-
Lys
CTT
[ENA]
¡û
>W1911118833
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19430
19501
+
Lys
CTT
[ENA]
¡û
>PL201000429
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
5145
5074
-
Lys
CTT
[ENA]
¡û
>W2011012084
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19430
19501
+
Lys
CTT
[ENA]
¡û
>W2110232116
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
50497
50568
+
Lys
CTT
[ENA]
¡û
>W2110312489
JADEXK010000089
Cyanobacteriota
Nostocales cyanobacterium LEGE 11386 [JADEXK]
7563
7492
-
Lys
CTT
[ENA]
¡û
>W2110781101
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
19372
19443
+
Lys
CTT
[ENA]
¡û
Identical group No.532447 (9 seq.)
>PL171000097
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
21597
21670
+
Lys
CTT
[ENA]
¡û
>PL171000118
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
171949
171876
-
Lys
CTT
[ENA]
¡û
>PL171000197
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
10795
10868
+
Lys
CTT
[ENA]
¡û
>W141038534
ALVX01000038
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
768
695
-
Lys
CTT
[ENA]
¡û
>PL191000384
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
3420
3349
-
Lys
CTT
[ENA]
¡û
>PL201000855
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
22894
22823
-
Lys
CTT
[ENA]
¡û
>W2110229622
JACJQJ010000022
Cyanobacteriota
Nostoc linckia FACHB-104 [JACJQJ]
90596
90667
+
Sup
CTA
[ENA]
¡û
>W2110230646
JACJRD010000050
Cyanobacteriota
Calothrix sp. FACHB-156 [JACJRD]
33560
33489
-
Lys
CTT
[ENA]
¡û
>W2110230816
JACJRG010000091
Cyanobacteriota
Anabaena minutissima FACHB-250 [JACJRG]
3765
3694
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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