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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = GAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195536 (9 seq.)
>PL171000100
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22162
22236
+
Phe
GAA
[ENA]
¡û
>WENV171003647
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
3064
2990
-
Phe
GAA
[ENA]
¡û
>PL191000522
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20765
20691
-
Phe
GAA
[ENA]
¡û
>W1911118835
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19871
19945
+
Phe
GAA
[ENA]
¡û
>PL201000431
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4704
4630
-
Phe
GAA
[ENA]
¡û
>W2011012086
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19871
19945
+
Phe
GAA
[ENA]
¡û
>W2110229774
JACJQL010000048
Cyanobacteriota
Nostoc parmelioides FACHB-3921 [JACJQL]
6517
6591
+
Phe
GAA
[ENA]
¡û
>W2110232118
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
50938
51012
+
Phe
GAA
[ENA]
¡û
>W2110781103
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
19814
19888
+
Phe
AAA
[ENA]
¡û
Identical group No.207531 (19 seq.)
>W1711081258
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
23839
23765
-
Phe
GAA
[ENA]
¡û
>PL171000133
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
4707
4781
+
Phe
GAA
[ENA]
¡û
>W1910646682
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24256
24182
-
Phe
GAA
[ENA]
¡û
>PL201000408
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88834
88760
-
Phe
GAA
[ENA]
¡û
>PL201000721
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
36407
36481
+
Phe
GAA
[ENA]
¡û
>W2010745200
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55193
55267
+
Phe
GAA
[ENA]
¡û
>W2010745396
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
10065
10139
+
Phe
GAA
[ENA]
¡û
>W2010745506
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
9000
9074
+
Phe
GAA
[ENA]
¡û
>W2010791990
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24256
24182
-
Phe
GAA
[ENA]
¡û
>W2110144712
JAAMUW010000163
Cyanobacteriota
Aphanizomenon flos-aquae CCAP 1446/1C [JAAMUW]
1908
1834
-
Phe
GAA
[ENA]
¡û
>W2110144767
JAAMUX010000167
Cyanobacteriota
Aphanizomenon flos-aquae CCAP 1446/1C [JAAMUX]
8503
8577
+
Phe
GAA
[ENA]
¡û
>W2110229706
JACJQK010000030
Cyanobacteriota
Calothrix sp. FACHB-1219 [JACJQK]
58567
58641
+
Phe
GAA
[ENA]
¡û
>W2110229964
JACJQP010000036
Cyanobacteriota
Anabaena sp. FACHB-709 [JACJQP]
3343
3417
+
Phe
GAA
[ENA]
¡û
>W2110230019
JACJQQ010000037
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [JACJQQ]
50493
50419
-
Phe
GAA
[ENA]
¡û
>W2110230649
JACJRD010000050
Cyanobacteriota
Calothrix sp. FACHB-156 [JACJRD]
33118
33044
-
Phe
GAA
[ENA]
¡û
>W2110230868
JACJRH010000050
Cyanobacteriota
Anabaena variabilis FACHB-171 [JACJRH]
21188
21114
-
Phe
GAA
[ENA]
¡û
>W2110312534
JADEXL010000117
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
5025
4951
-
Phe
GAA
[ENA]
¡û
>C231102990
CP064879
Cyanobacteriota
Tolypothrix sp. PCC 7601 [CP064879]
646421
646495
+
Phe
GAA
-
¡û
>C131005050
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2471789
2471863
+
Phe
GAA
[Ensembl]
¡û
Identical group No.297351 (1 seq.)
>PL203000053
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
43208
43134
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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