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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = GCA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.517452 (1 seq.)
>PL201000445
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
43837
43763
-
Cys
GCA
[ENA]
¡û
Identical group No.526677 (20 seq.)
>W1711081254
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
24411
24338
-
Cys
GCA
[ENA]
¡û
>PL191000007
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
71707
71780
+
Cys
GCA
[ENA]
¡û
>PL191000449
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
616099
616026
-
Cys
GCA
[ENA]
¡û
>W1910646677
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24826
24753
-
Cys
GCA
[ENA]
¡û
>W1911118830
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19175
19248
+
Cys
GCA
[ENA]
¡û
>PL201000426
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
5398
5325
-
Cys
GCA
[ENA]
¡û
>PL201000716
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
35837
35910
+
Cys
GCA
[ENA]
¡û
>W2010791985
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24826
24753
-
Cys
GCA
[ENA]
¡û
>W2011012081
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19175
19248
+
Cys
GCA
[ENA]
¡û
>W2110229391
JACJQF010000031
Cyanobacteriota
Calothrix sp. FACHB-168 [JACJQF]
44911
44838
-
Cys
GCA
[ENA]
¡û
>W2110229505
JACJQH010000041
Cyanobacteriota
Calothrix parietina FACHB-288 [JACJQH]
39680
39607
-
Cys
GCA
[ENA]
¡û
>W2110229657
JACJQJ010000151
Cyanobacteriota
Nostoc linckia FACHB-104 [JACJQJ]
453
526
+
Cys
GCA
[ENA]
¡û
>W2110229702
JACJQK010000030
Cyanobacteriota
Calothrix sp. FACHB-1219 [JACJQK]
57742
57815
+
Cys
GCA
[ENA]
¡û
>W2110312530
JADEXL010000117
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
5877
5804
-
Cys
GCA
[ENA]
¡û
>C231102986
CP064879
Cyanobacteriota
Tolypothrix sp. PCC 7601 [CP064879]
645569
645642
+
Cys
GCA
-
¡û
>W2110781099
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
19116
19189
+
Cys
GCA
[ENA]
¡û
>W2130014855
JACJQI010000039
Cyanobacteriota
Aulosira sp. FACHB-113 [JACJQI]
54554
54627
+
Cys
GCA
[ENA]
¡û
>W1511013817
JHEG02000001
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
68440
68367
-
Cys
GCA
[ENA]
¡û
>W1610003533
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
32004
31931
-
Cys
GCA
[ENA]
¡û
>W1710004153
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
32004
31931
-
Cys
GCA
[ENA]
¡û
Identical group No.532456 (4 seq.)
>PL191000517
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
21459
21386
-
Cys
GCA
[ENA]
¡û
>PL201000403
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
89532
89459
-
Cys
GCA
[ENA]
¡û
>W2110312898
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
25689
25762
+
Cys
GCA
[ENA]
¡û
>W2110781119
WBKM01000207
Cyanobacteriota
Nostoc sp. WHI [WBKM]
43413
43340
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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