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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = GTC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266001 (14 seq.)
>PL171000115
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
172291
172214
-
Asp
GTC
[ENA]
¡û
>WENV171003539
NNBU01000334
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
869
946
+
Asp
GTC
[ENA]
¡û
>WENV171003543
NNBU01000345
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
746
669
-
Asp
GTC
[ENA]
¡û
>WENV171003663
NNBU01003492
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
267
190
-
Asp
GTC
[ENA]
¡û
>PL191000447
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
616339
616262
-
Asp
GTC
[ENA]
¡û
>W1911118828
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
18935
19012
+
Asp
GTC
[ENA]
¡û
>PL201000401
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
89772
89695
-
Asp
GTC
[ENA]
¡û
>W2011012079
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
18935
19012
+
Asp
GTC
[ENA]
¡û
>W2110229390
JACJQF010000031
Cyanobacteriota
Calothrix sp. FACHB-168 [JACJQF]
45075
44998
-
Asp
GTC
[ENA]
¡û
>W2110229701
JACJQK010000030
Cyanobacteriota
Calothrix sp. FACHB-1219 [JACJQK]
57578
57655
+
Asp
GTC
[ENA]
¡û
>W2110230643
JACJRD010000050
Cyanobacteriota
Calothrix sp. FACHB-156 [JACJRD]
33979
33902
-
Asp
GTC
[ENA]
¡û
>W2110230714
JACJRE010000127
Cyanobacteriota
Tolypothrix sp. FACHB-123 [JACJRE]
2617
2540
-
Asp
GTC
[ENA]
¡û
>W2110312896
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
25449
25526
+
Asp
GTC
[ENA]
¡û
>C201083647
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4534547
4534470
-
Asp
GTC
-
¡û
Identical group No.266449 (4 seq.)
>W1711081252
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
24651
24574
-
Asp
GTC
[ENA]
¡û
>W1910646675
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
25066
24989
-
Asp
GTC
[ENA]
¡û
>PL201000714
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
35597
35674
+
Asp
GTC
[ENA]
¡û
>W2010791983
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
25066
24989
-
Asp
GTC
[ENA]
¡û
Identical group No.266545 (7 seq.)
>W131058319
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4838745
4838822
+
Asp
GTC
[ENA]
¡û
>W1711711379
MTAW01000169
Cyanobacteriota
Nostoc sp. 106C [MTAW]
15958
16035
+
Asp
GTC
[ENA]
¡û
>PL171000173
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
99503
99580
+
Asp
GTC
[ENA]
¡û
>PL201000444
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
43999
43922
-
Asp
GTC
[ENA]
¡û
>W2110312561
JADEXL010000460
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
1392
1315
-
Asp
GTC
[ENA]
¡û
>W1610003567
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1056
1133
+
Asp
GTC
[ENA]
¡û
>W1710004187
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1056
1133
+
Asp
GTC
[ENA]
¡û
Identical group No.266576 (28 seq.)
>WENV171003376
NNBT01007710
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
11506
11583
+
Asp
GTC
[ENA]
¡û
>W1910596224
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
25381
25458
+
Asp
GTC
[ENA]
¡û
>W1910596308
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
25382
25459
+
Asp
GTC
[ENA]
¡û
>W1910596389
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
25382
25459
+
Asp
GTC
[ENA]
¡û
>W1910596471
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
25380
25457
+
Asp
GTC
[ENA]
¡û
>W1910596551
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
25373
25450
+
Asp
GTC
[ENA]
¡û
>W1910596622
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
26891
26814
-
Asp
GTC
[ENA]
¡û
>W1910596699
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
25380
25457
+
Asp
GTC
[ENA]
¡û
>W1910596767
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
26562
26639
+
Asp
GTC
[ENA]
¡û
>W1910596843
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
25364
25441
+
Asp
GTC
[ENA]
¡û
>W1910596955
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
25602
25679
+
Asp
GTC
[ENA]
¡û
>W1910597001
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
27285
27362
+
Asp
GTC
[ENA]
¡û
>W1910597126
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
25365
25442
+
Asp
GTC
[ENA]
¡û
>W1910597222
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
55002
55079
+
Asp
GTC
[ENA]
¡û
>PL201000424
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
5638
5561
-
Asp
GTC
[ENA]
¡û
>W2010766567
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
25381
25458
+
Asp
GTC
[ENA]
¡û
>W2010766651
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
25382
25459
+
Asp
GTC
[ENA]
¡û
>W2010766732
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
25382
25459
+
Asp
GTC
[ENA]
¡û
>W2010766814
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
25380
25457
+
Asp
GTC
[ENA]
¡û
>W2010766894
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
25373
25450
+
Asp
GTC
[ENA]
¡û
>W2010766965
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
26891
26814
-
Asp
GTC
[ENA]
¡û
>W2010767042
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
25380
25457
+
Asp
GTC
[ENA]
¡û
>W2010767110
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
26562
26639
+
Asp
GTC
[ENA]
¡û
>W2010767186
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
25364
25441
+
Asp
GTC
[ENA]
¡û
>W2010767298
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
25602
25679
+
Asp
GTC
[ENA]
¡û
>W2010767344
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
27285
27362
+
Asp
GTC
[ENA]
¡û
>W2010767469
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
25365
25442
+
Asp
GTC
[ENA]
¡û
>W2010767565
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
55002
55079
+
Asp
GTC
[ENA]
¡û
Identical group No.294986 (1 seq.)
>PL201000852
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
23232
23156
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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