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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = GTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.191954 (1 seq.)
>PL201000458
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
41779
41703
-
His
GTG
[ENA]
¡û
Identical group No.195540 (31 seq.)
>PL171000025
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
50074
49998
-
Pseudo
GTG
[Ensembl]
¡û
>PL171000114
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
23443
23519
+
Pseudo
GTG
[ENA]
¡û
>PL171000147
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
6070
6146
+
Pseudo
GTG
[ENA]
¡û
>PL171000184
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
102985
103061
+
Pseudo
GTG
[ENA]
¡û
>W131058337
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4841177
4841253
+
Pseudo
GTG
[ENA]
¡û
>PL191000396
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
1903
1828
-
His
GTG
[ENA]
¡û
>W1910646693
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23215
23140
-
His
GTG
[ENA]
¡û
>W1911118846
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20830
20905
+
His
GTG
[ENA]
¡û
>PL201000422
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
87635
87560
-
His
GTG
[ENA]
¡û
>PL201000442
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
3745
3670
-
His
GTG
[ENA]
¡û
>PL201000732
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
37448
37523
+
His
GTG
[ENA]
¡û
>W2010745211
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
56153
56228
+
His
GTG
[ENA]
¡û
>W2010745407
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
11025
11100
+
His
GTG
[ENA]
¡û
>W2010745517
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
9960
10035
+
His
GTG
[ENA]
¡û
>W2010745633
JACKZU010000342
Cyanobacteriota
Nostoc sp. 2RC [JACKZU]
6067
6142
+
His
GTG
[ENA]
¡û
>W2010792001
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23215
23140
-
His
GTG
[ENA]
¡û
>W2011012097
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20830
20905
+
His
GTG
[ENA]
¡û
>W2011488895
RSCN01000028
Cyanobacteriota
Nostoc sp. PCC 7120 [RSCN]
26270
26346
+
His
GTG
[ENA]
¡û
>W2110229276
JACJQC010000035
Cyanobacteriota
Anabaena cylindrica FACHB-318 [JACJQC]
49099
49023
-
His
GTG
[ENA]
¡û
>W2110229787
JACJQL010000048
Cyanobacteriota
Nostoc parmelioides FACHB-3921 [JACJQL]
7860
7936
+
His
GTG
[ENA]
¡û
>W2110229978
JACJQP010000036
Cyanobacteriota
Anabaena sp. FACHB-709 [JACJQP]
4705
4781
+
His
GTG
[ENA]
¡û
>W2110230033
JACJQQ010000037
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [JACJQQ]
49131
49055
-
His
GTG
[ENA]
¡û
>W2110230092
JACJQR010000043
Cyanobacteriota
Anabaena cylindrica FACHB-170 [JACJQR]
10881
10957
+
His
GTG
[ENA]
¡û
>W2110230882
JACJRH010000050
Cyanobacteriota
Anabaena variabilis FACHB-171 [JACJRH]
19826
19750
-
His
GTG
[ENA]
¡û
>W2110231580
JACJRV010000056
Cyanobacteriota
Nostoc sp. FACHB-152 [JACJRV]
26240
26165
-
His
GTG
[ENA]
¡û
>W2110312525
JADEXL010000099
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
952
1027
+
His
GTG
[ENA]
¡û
>W2110312917
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
27708
27783
+
His
GTG
[ENA]
¡û
>C201083667
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4532372
4532297
-
His
GTG
-
¡û
>C231030690
CP017708
Cyanobacteriota
Moorena producens JHB [CP017708]
9022812
9022738
-
His
GTG
-
¡û
>W1610003578
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1070
1146
+
Pseudo
GTG
[ENA]
¡û
>W1710004198
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1070
1146
+
Pseudo
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK