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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = GTT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.733106 (6 seq.)
>WENV171003648
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2981
2907
-
Asn
GTT
[ENA]
¡û
>PL191000523
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20682
20608
-
Asn
GTT
[ENA]
¡û
>W1911118836
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19954
20028
+
Asn
GTT
[ENA]
¡û
>PL201000432
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4621
4547
-
Asn
GTT
[ENA]
¡û
>W2011012087
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19954
20028
+
Asn
GTT
[ENA]
¡û
>W2110232119
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51021
51095
+
Asn
GTT
[ENA]
¡û
Identical group No.743768 (8 seq.)
>W1910646683
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24173
24099
-
Asn
GTT
[ENA]
¡û
>PL201000722
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
36490
36564
+
Asn
GTT
[ENA]
¡û
>W2010745201
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55276
55350
+
Asn
GTT
[ENA]
¡û
>W2010745397
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
10148
10222
+
Asn
GTT
[ENA]
¡û
>W2010745507
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
9083
9157
+
Asn
GTT
[ENA]
¡û
>W2010791991
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24173
24099
-
Asn
GTT
[ENA]
¡û
>W2012458231
WVID01000040
Cyanobacteriota
Nostoc sp. B(2019) [WVID]
8831
8757
-
Asn
GTT
[ENA]
¡û
>W2130044897
WBKN01000816
Cyanobacteriota
Nostoc commune BAE [WBKN]
15949
16023
+
Asn
GTT
[ENA]
¡û
Identical group No.743775 (3 seq.)
>PL171000199
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
11383
11456
+
Asn
GTT
[ENA]
¡û
>PL201000448
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
43125
43051
-
Asn
GTT
[ENA]
¡û
>W2010745620
JACKZU010000342
Cyanobacteriota
Nostoc sp. 2RC [JACKZU]
4775
4849
+
Asn
GTT
[ENA]
¡û
Identical group No.750890 (5 seq.)
>C181137723
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4437779
4437853
+
Asn
GTT
-
¡û
>PL201000409
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88751
88677
-
Asn
GTT
[ENA]
¡û
>W2110312903
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
26495
26569
+
Asn
GTT
[ENA]
¡û
>C201083654
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4533501
4533427
-
Asn
GTT
-
¡û
>W2110781104
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
19897
19971
+
Asn
GTT
[ENA]
¡û
Identical group No.831235 (1 seq.)
>PL201000856
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
22364
22290
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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