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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = GTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.438743 (10 seq.)
>PL171000122
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
171398
171324
-
Asn
GTT
[ENA]
¡û
>WENV180015178
FQKF010395741
[FQKF] soil metagenome; Soil
97
23
-
Asn
GTT
[ENA]
¡û
>WENV171003648
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2981
2907
-
Asn
GTT
[ENA]
¡û
>PL191000523
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20682
20608
-
Asn
GTT
[ENA]
¡û
>W1911118836
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19954
20028
+
Asn
GTT
[ENA]
¡û
>PL201000432
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4621
4547
-
Asn
GTT
[ENA]
¡û
>PL201000856
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
22364
22290
-
Asn
GTT
[ENA]
¡û
>W2011012087
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19954
20028
+
Asn
GTT
[ENA]
¡û
>W2110232119
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51021
51095
+
Asn
GTT
[ENA]
¡û
>W2130000740
BLAY01000080
Cyanobacteriota
Microseira wollei NIES-4236 [BLAY]
15191
15264
+
Asn
GTT
[ENA]
¡û
Identical group No.446429 (24 seq.)
>W131065819
ANNX01000019
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
29140
29066
-
Asn
GTT
[ENA]
¡û
>W1711711306
MTAV01000014
Cyanobacteriota
Nostoc sp. T09 [MTAV]
91870
91796
-
Asn
GTT
[ENA]
¡û
>PL171000199
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
11383
11456
+
Asn
GTT
[ENA]
¡û
>PL171000518
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
1695
1621
-
Asn
GTT
[ENA]
¡û
>WENV180015515
FQKF010785384
[FQKF] soil metagenome; Soil
211
137
-
Asn
GTT
[ENA]
¡û
>W1910976661
NKFP01000006
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
1483958
1484032
+
Asn
GTT
[ENA]
¡û
>PL201000448
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
43125
43051
-
Asn
GTT
[ENA]
¡û
>W2010745620
JACKZU010000342
Cyanobacteriota
Nostoc sp. 2RC [JACKZU]
4775
4849
+
Asn
GTT
[ENA]
¡û
>W2010992074
NKFP01000006
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
1483958
1484032
+
Asn
GTT
[ENA]
¡û
>W2110229396
JACJQF010000031
Cyanobacteriota
Calothrix sp. FACHB-168 [JACJQF]
44003
43929
-
Asn
GTT
[ENA]
¡û
>W2110229446
JACJQG010000036
Cyanobacteriota
Calothrix anomala FACHB-343 [JACJQG]
38885
38811
-
Asn
GTT
[ENA]
¡û
>W2110229511
JACJQH010000041
Cyanobacteriota
Calothrix parietina FACHB-288 [JACJQH]
38879
38805
-
Asn
GTT
[ENA]
¡û
>W2110229707
JACJQK010000030
Cyanobacteriota
Calothrix sp. FACHB-1219 [JACJQK]
58650
58724
+
Asn
GTT
[ENA]
¡û
>W2110230721
JACJRE010000127
Cyanobacteriota
Tolypothrix sp. FACHB-123 [JACJRE]
1574
1500
-
Asn
GTT
[ENA]
¡û
>W2110230818
JACJRG010000091
Cyanobacteriota
Anabaena minutissima FACHB-250 [JACJRG]
3188
3114
-
Asn
GTT
[ENA]
¡û
>W2110312535
JADEXL010000117
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
4942
4868
-
Asn
GTT
[ENA]
¡û
>C211013092
AP023441
Cyanobacteriota
Nostoc sp. MS1 [AP023441]
6084048
6084122
+
Asn
GTT
-
¡û
>C231097677
CP063785
Cyanobacteriota
Tolypothrix sp. PCC 7712 [CP063785]
3917410
3917336
-
Asn
GTT
-
¡û
>C231102991
CP064879
Cyanobacteriota
Tolypothrix sp. PCC 7601 [CP064879]
646504
646578
+
Asn
GTT
-
¡û
>C231652008
LR882967
Cyanobacteriota
Planktothrix pseudagardhii No.713 [LR882967]
3134693
3134619
-
Asn
GTT
-
¡û
>W1511013821
JHEG02000001
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
67868
67794
-
Asn
GTT
[ENA]
¡û
>C161002501
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
2280034
2280108
+
Asn
GTT
[Ensembl]
¡û
>W1610003538
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
31069
30995
-
Asn
GTT
[ENA]
¡û
>W1710004158
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
31069
30995
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK