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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = TAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195538 (11 seq.)
>PL191000527
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20284
20210
-
Leu
TAA
[ENA]
¡û
>W1910646687
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23694
23620
-
Leu
TAA
[ENA]
¡û
>W1911118840
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20352
20426
+
Leu
TAA
[ENA]
¡û
>PL201000436
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4223
4149
-
Leu
TAA
[ENA]
¡û
>PL201000726
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
36969
37043
+
Leu
TAA
[ENA]
¡û
>W2010745205
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55674
55748
+
Leu
TAA
[ENA]
¡û
>W2010745401
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
10546
10620
+
Leu
TAA
[ENA]
¡û
>W2010745511
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
9481
9555
+
Leu
TAA
[ENA]
¡û
>W2010791995
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23694
23620
-
Leu
TAA
[ENA]
¡û
>W2011012091
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20352
20426
+
Leu
TAA
[ENA]
¡û
>W2110232123
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51419
51493
+
Leu
TAA
[ENA]
¡û
Identical group No.208574 (21 seq.)
>W1711711392
MTAW01000169
Cyanobacteriota
Nostoc sp. 106C [MTAW]
18075
18150
+
Leu
TAA
[ENA]
¡û
>W1711711455
MTAX01000103
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
24898
24972
+
Leu
TAA
[ENA]
¡û
>PL171000166
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
2960
2887
-
Leu
TAA
[ENA]
¡û
>C181004796
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1809164
1809089
-
Leu
TAA
-
¡û
>PL201000416
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88187
88111
-
Leu
TAA
[ENA]
¡û
>W2010767198
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26967
27042
+
Leu
TAA
[ENA]
¡û
>W2110229403
JACJQF010000031
Cyanobacteriota
Calothrix sp. FACHB-168 [JACJQF]
42394
42319
-
Leu
TAA
[ENA]
¡û
>W2110229453
JACJQG010000036
Cyanobacteriota
Calothrix anomala FACHB-343 [JACJQG]
38185
38110
-
Leu
TAA
[ENA]
¡û
>W2110229518
JACJQH010000041
Cyanobacteriota
Calothrix parietina FACHB-288 [JACJQH]
38179
38104
-
Leu
TAA
[ENA]
¡û
>W2110229584
JACJQI010000039
Cyanobacteriota
Aulosira sp. FACHB-113 [JACJQI]
56183
56258
+
Leu
TAA
[ENA]
¡û
>W2110229667
JACJQJ010000151
Cyanobacteriota
Nostoc linckia FACHB-104 [JACJQJ]
2145
2220
+
Leu
TAA
[ENA]
¡û
>W2110229714
JACJQK010000030
Cyanobacteriota
Calothrix sp. FACHB-1219 [JACJQK]
60259
60334
+
Leu
TAA
[ENA]
¡û
>W2110230729
JACJRE010000127
Cyanobacteriota
Tolypothrix sp. FACHB-123 [JACJRE]
792
717
-
Leu
TAA
[ENA]
¡û
>W2110312541
JADEXL010000117
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
4251
4176
-
Leu
TAA
[ENA]
¡û
>C231097683
CP063785
Cyanobacteriota
Tolypothrix sp. PCC 7712 [CP063785]
3916719
3916644
-
Leu
TAA
-
¡û
>C231102997
CP064879
Cyanobacteriota
Tolypothrix sp. PCC 7601 [CP064879]
647195
647270
+
Leu
TAA
-
¡û
>C241145284
CP050440
Cyanobacteriota
Tolypothrix sp. PCC 7910 [CP050440]
7301371
7301296
-
Leu
TAA
-
¡û
>C241325381
CP135918
Cyanobacteriota
Fischerella sp. JS2 [CP135918]
5772134
5772210
+
Leu
TAA
-
¡û
>W1511013841
JHEG02000036
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
6796
6872
+
Leu
TAA
[ENA]
¡û
>W1610003544
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
30378
30303
-
Leu
TAA
[ENA]
¡û
>W1710004164
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
30378
30303
-
Leu
TAA
[ENA]
¡û
Identical group No.297352 (1 seq.)
>PL201000454
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
42462
42387
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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