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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = TAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.509012 (43 seq.)
>PL191000451
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
615866
615791
-
Val
TAC
[ENA]
¡û
>PL191000530
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20046
19971
-
Val
TAC
[ENA]
¡û
>W1910596239
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27308
27383
+
Val
TAC
[ENA]
¡û
>W1910596323
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27309
27384
+
Val
TAC
[ENA]
¡û
>W1910596404
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27309
27384
+
Val
TAC
[ENA]
¡û
>W1910596486
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27307
27382
+
Val
TAC
[ENA]
¡û
>W1910596566
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27300
27375
+
Val
TAC
[ENA]
¡û
>W1910596637
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
24964
24889
-
Val
TAC
[ENA]
¡û
>W1910596714
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27307
27382
+
Val
TAC
[ENA]
¡û
>W1910596782
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28489
28564
+
Val
TAC
[ENA]
¡û
>W1910596858
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27291
27366
+
Val
TAC
[ENA]
¡û
>W1910596970
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27529
27604
+
Val
TAC
[ENA]
¡û
>W1910597016
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29212
29287
+
Val
TAC
[ENA]
¡û
>W1910597141
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27292
27367
+
Val
TAC
[ENA]
¡û
>W1910597237
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56929
57004
+
Val
TAC
[ENA]
¡û
>W1910646690
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23455
23380
-
Val
TAC
[ENA]
¡û
>W1911118843
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20590
20665
+
Val
TAC
[ENA]
¡û
>PL201000439
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
3985
3910
-
Val
TAC
[ENA]
¡û
>PL201000729
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
37208
37283
+
Val
TAC
[ENA]
¡û
>W2010745208
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55912
55987
+
Val
TAC
[ENA]
¡û
>W2010745404
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
10784
10859
+
Val
TAC
[ENA]
¡û
>W2010745514
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
9719
9794
+
Val
TAC
[ENA]
¡û
>W2010766582
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27308
27383
+
Val
TAC
[ENA]
¡û
>W2010766666
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27309
27384
+
Val
TAC
[ENA]
¡û
>W2010766747
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27309
27384
+
Val
TAC
[ENA]
¡û
>W2010766829
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27307
27382
+
Val
TAC
[ENA]
¡û
>W2010766909
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27300
27375
+
Val
TAC
[ENA]
¡û
>W2010766980
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
24964
24889
-
Val
TAC
[ENA]
¡û
>W2010767057
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27307
27382
+
Val
TAC
[ENA]
¡û
>W2010767125
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28489
28564
+
Val
TAC
[ENA]
¡û
>W2010767201
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27291
27366
+
Val
TAC
[ENA]
¡û
>W2010767313
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27529
27604
+
Val
TAC
[ENA]
¡û
>W2010767359
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29212
29287
+
Val
TAC
[ENA]
¡û
>W2010767484
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27292
27367
+
Val
TAC
[ENA]
¡û
>W2010767580
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56929
57004
+
Val
TAC
[ENA]
¡û
>W2010791998
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23455
23380
-
Val
TAC
[ENA]
¡û
>W2011012094
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20590
20665
+
Val
TAC
[ENA]
¡û
>W2011750685
SZNH01000031
Cyanobacteriota
Nostoc sp. PA-18-2419 JC1668 [SZNH]
63252
63177
-
Val
TAC
[ENA]
¡û
>W2110229826
JACJQM010000024
Cyanobacteriota
Nostoc sp. FACHB-888 [JACJQM]
41976
42051
+
Val
TAC
[ENA]
¡û
>W2110232126
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51658
51733
+
Val
TAC
[ENA]
¡û
>W2110233112
JACJTD010000050
Cyanobacteriota
Nostoc foliaceum FACHB-393 [JACJTD]
25503
25428
-
Val
TAC
[ENA]
¡û
>W2110233180
JACJTE010000052
Cyanobacteriota
Nostoc linckia FACHB-391 [JACJTE]
23735
23660
-
Val
TAC
[ENA]
¡û
>W2110312914
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
27468
27543
+
Val
TAC
[ENA]
¡û
Identical group No.533246 (6 seq.)
>W1711081269
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
22295
22220
-
Val
TAC
[ENA]
¡û
>WENV171003657
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2092
2017
-
Val
TAC
[ENA]
¡û
>C181137727
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4438195
4438270
+
Val
TAC
-
¡û
>PL201000419
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
87875
87800
-
Val
TAC
[ENA]
¡û
>W2110781114
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
20903
20978
+
Val
TAC
[ENA]
¡û
>W2110781132
WBKM01000207
Cyanobacteriota
Nostoc sp. WHI [WBKM]
41774
41699
-
Val
TAC
[ENA]
¡û
Identical group No.667173 (1 seq.)
>PL201000859
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
22050
21977
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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