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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = TCC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.526680 (34 seq.)
>PL191000529
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20122
20052
-
Gly
TCC
[ENA]
¡û
>W1910596238
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27232
27302
+
Gly
TCC
[ENA]
¡û
>W1910596322
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27233
27303
+
Gly
TCC
[ENA]
¡û
>W1910596403
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27233
27303
+
Gly
TCC
[ENA]
¡û
>W1910596485
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27231
27301
+
Gly
TCC
[ENA]
¡û
>W1910596565
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27224
27294
+
Gly
TCC
[ENA]
¡û
>W1910596636
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25040
24970
-
Gly
TCC
[ENA]
¡û
>W1910596713
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27231
27301
+
Gly
TCC
[ENA]
¡û
>W1910596781
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28413
28483
+
Gly
TCC
[ENA]
¡û
>W1910596857
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27215
27285
+
Gly
TCC
[ENA]
¡û
>W1910596969
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27453
27523
+
Gly
TCC
[ENA]
¡û
>W1910597015
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29136
29206
+
Gly
TCC
[ENA]
¡û
>W1910597140
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27216
27286
+
Gly
TCC
[ENA]
¡û
>W1910597236
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56853
56923
+
Gly
TCC
[ENA]
¡û
>W1911118842
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20514
20584
+
Gly
TCC
[ENA]
¡û
>PL201000438
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4061
3991
-
Gly
TCC
[ENA]
¡û
>PL201000858
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
22126
22056
-
Gly
TCC
[ENA]
¡û
>W2010766581
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27232
27302
+
Gly
TCC
[ENA]
¡û
>W2010766665
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27233
27303
+
Gly
TCC
[ENA]
¡û
>W2010766746
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27233
27303
+
Gly
TCC
[ENA]
¡û
>W2010766828
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27231
27301
+
Gly
TCC
[ENA]
¡û
>W2010766908
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27224
27294
+
Gly
TCC
[ENA]
¡û
>W2010766979
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25040
24970
-
Gly
TCC
[ENA]
¡û
>W2010767056
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27231
27301
+
Gly
TCC
[ENA]
¡û
>W2010767124
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28413
28483
+
Gly
TCC
[ENA]
¡û
>W2010767200
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27215
27285
+
Gly
TCC
[ENA]
¡û
>W2010767312
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27453
27523
+
Gly
TCC
[ENA]
¡û
>W2010767358
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29136
29206
+
Gly
TCC
[ENA]
¡û
>W2010767483
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27216
27286
+
Gly
TCC
[ENA]
¡û
>W2010767579
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56853
56923
+
Gly
TCC
[ENA]
¡û
>W2011012093
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20514
20584
+
Gly
TCC
[ENA]
¡û
>W2011750684
SZNH01000031
Cyanobacteriota
Nostoc sp. PA-18-2419 JC1668 [SZNH]
63328
63258
-
Gly
TCC
[ENA]
¡û
>W2110229631
JACJQJ010000022
Cyanobacteriota
Nostoc linckia FACHB-104 [JACJQJ]
92272
92342
+
Gly
TCC
[ENA]
¡û
>W2110229825
JACJQM010000024
Cyanobacteriota
Nostoc sp. FACHB-888 [JACJQM]
41900
41970
+
Gly
TCC
[ENA]
¡û
Identical group No.530194 (12 seq.)
>W1711081268
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
22371
22300
-
Gly
TCC
[ENA]
¡û
>WENV171003656
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2168
2097
-
Gly
TCC
[ENA]
¡û
>C181137726
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4438119
4438190
+
Gly
TCC
-
¡û
>W1910646689
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23531
23461
-
Gly
TCC
[ENA]
¡û
>PL201000418
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
87951
87880
-
Gly
TCC
[ENA]
¡û
>PL201000728
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
37132
37202
+
Gly
TCC
[ENA]
¡û
>W2010745207
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55836
55907
+
Gly
TCC
[ENA]
¡û
>W2010745403
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
10708
10779
+
Gly
TCC
[ENA]
¡û
>W2010745513
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
9643
9714
+
Gly
TCC
[ENA]
¡û
>W2010791997
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23531
23461
-
Gly
TCC
[ENA]
¡û
>W2110232125
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51582
51653
+
Gly
TCC
[ENA]
¡û
>W2110312913
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
27392
27462
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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